Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66360 394 / 2e-136 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) AT2G47420 254 / 4e-82 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT1G01860 102 / 2e-24 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034669 [exp] 240 / 2e-76 AT2G47420 527 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10017864 [exp] 239 / 3e-76 AT2G47420 529 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10009319 [exp] 98 / 6e-22 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015847 [exp] 57 / 2e-09 AT1G01860 216 / 6e-70 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018900 [exp] 405 / 1e-140 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G121200 [exp] 241 / 7e-77 AT2G47420 526 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Potri.006G264101 [exp] 130 / 3e-37 AT5G66360 120 / 1e-33 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G077100 [exp] 101 / 6e-24 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00398 [flax] [poplar] RrnaAD Ribosomal RNA adenine dimethylase
Representative CDS sequence Show only first row Show all	>Lus10041797 pacid=23146866 polypeptide=Lus10041797 locus=Lus10041797.g ID=Lus10041797.BGIv1.0 annot-version=v1.0 ATGACTACCCACTTGAAAAGCCGCCTACTTTTCACTCCAAATCAATCTCCCTTCCACTTTCTTCGCGCCATTCTTCAAGGCTATCATCTCAGCCTGCACC ATTATCACTCTTCTGAACCTCAGACCTTCAATTGCGATGGTAACCCGAGAAGAAAGGACGATTCCGAAGCGGGGTTGTATCTAATGAAGAGCAAAGGCCA ACACTTGCTCACAAATCCACGAATTCTCGACACAATCGTTCGCAAATCCGACATTAAACCTACCGACACTGTCCTGGAGATCGGACCCGGGACGGGGAAT CTCACTCTCAGGCTTCTTCAGGTGGCTCGAAAAGTTGTTGCTGTAGAACTCGACAAAAGAATGGTGGAGGTTTTGCAGAAACGCGTAGCCGAGAGCGGAT TCCAGGACAAACTCTCGGTTATTTGTCAGGACGCGTTGAAAGCGGAATTCCCTCCGTTTGATCTCGTTGTGGCGAACATTCCTTATGGTATATCTTCACC TCTCATAATCAAGCTGGTCTATGGAACGAATCCATTTAGGAGCGCTACGCTGCTGCTTCAGAAGGAGTTCGCCAGGCGGTTGCTGGCGAATCCAGGTGAT TCGGAGTTCAACAGACTGGCAGTTAACGTGAAGTTGGTGGCTGATGTTAAGTTTGTGATGGATGTAAGCAAGAGGGATTTTCTGCCTCCTCCCAAAGTCG ATTCTTCTGTGGTGATGATCCATCCAAAAGCCGAGGTACCTGATGTGAACCTTGAGGAGTGGTGTGCTTTCACCAGGACTTGTTTTGGCAAGAAGAACAA GACCCTCGGGGCAACTTTTAAGCAGAAGAAGAAGGTGGCTGAGCTGCTTAAATTGTCGAGTAATTGTACGGGTTTTGAGCTTGAGAATTGCGAGAATGGA GCGGAGACTGACGGTGATGGTGATGAAGAGTGTGATGAGAAATTGGGAGAGGAATTCGGTGTTTTCAAGGAGAAGATTGTAGGAGTATTGAGGAATGGGG GATTTGAAGATAAGAGACCTTCAAAGTTGAAGAATGAGGAGTTGTTAGAGTTGCTTTCGTTGCTCAATCAATCTGGTGTTTATTTTCGCAACCCCACAAA TGCTGGCAGTTCACCGTTTTTCTAG
AA sequence Show only first row Show all	>Lus10041797 pacid=23146866 polypeptide=Lus10041797 locus=Lus10041797.g ID=Lus10041797.BGIv1.0 annot-version=v1.0 MTTHLKSRLLFTPNQSPFHFLRAILQGYHLSLHHYHSSEPQTFNCDGNPRRKDDSEAGLYLMKSKGQHLLTNPRILDTIVRKSDIKPTDTVLEIGPGTGN LTLRLLQVARKVVAVELDKRMVEVLQKRVAESGFQDKLSVICQDALKAEFPPFDLVVANIPYGISSPLIIKLVYGTNPFRSATLLLQKEFARRLLANPGD SEFNRLAVNVKLVADVKFVMDVSKRDFLPPPKVDSSVVMIHPKAEVPDVNLEEWCAFTRTCFGKKNKTLGATFKQKKKVAELLKLSSNCTGFELENCENG AETDGDGDEECDEKLGEEFGVFKEKIVGVLRNGGFEDKRPSKLKNEELLELLSLLNQSGVYFRNPTNAGSSPFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	0	1
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	3.0	0.8014
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	3.5	0.7866
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	5.3	0.7891
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	9.9	0.7313
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	13.1	0.7232
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	14.5	0.7467
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	14.8	0.7499
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10022124 [exp]	15.0	0.6754
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	17.3	0.7209
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	20.0	0.6991

Compare expression of checked genes

Lus10041797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.