Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51040 294 / 1e-101 RTH RTE1-homolog (.1.2.3) AT2G26070 223 / 3e-73 RTE1 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028350 [exp] 481 / 2e-175 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10030001 [exp] 187 / 2e-59 AT2G26070 276 / 5e-94 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10035322 [exp] 0 / 1 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017900 [exp] 315 / 1e-109 AT3G51040 280 / 5e-96 RTE1-homolog (.1.2.3) Potri.018G053900 [exp] 218 / 3e-71 AT2G26070 330 / 4e-115 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.006G229900 [exp] 215 / 3e-70 AT2G26070 360 / 3e-127 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05608 [flax] [poplar] DUF778 Protein of unknown function (DUF778)
Representative CDS sequence Show only first row Show all	>Lus10041800 pacid=23146967 polypeptide=Lus10041800 locus=Lus10041800.g ID=Lus10041800.BGIv1.0 annot-version=v1.0 ATGGGGGAACTAGTGGATCCTGAGCAACAAAGGATATTGGACGAGAACTTTTCAGGGAGTTTGCAGATTGATCCCAATAGAGCTCGATTCCCTTACTGTA TTGTCTGGACTCCTCTTCCTGTTATATCATGGCTCATTCCTTTTATCGGCCACATTGGTATCTGCAGAGAGGATGGTGTGATCCTGGACTTTGCAGGGCC TAACTTTGTTTGTGTCGATAATTTTGCATTCGGTTCAGTAACACGCTACTTCCAGATCAACAAGGAAAAGGACTGTGACATGTTCTCCCACGAGTCGGCC TTCATCGGCCAGGACGAAGAGGACCAATACAGCATTCAAAAATCCGGAAAAGATGGATCGGCATGGGACAGTGCATTAACCAAGGGGACGCAGGAGTTCC AGCACCATGCATACAGTCTTTTGACGTGCAATTGCCATTCATTTGTTGCCAACAACTTGAACAGGTTGGGATTCCAATCAGGCGGGTGGAATGTGGTGAA CCTTGCACTGCTGCTGTTGATGAAAGGCCGTTGGGTGAATACAGGAGCAATGTTGAGATCGTACTTACCCTTTGTGATAGTGAGTGTGTTCGGGATTATA TTGGGTGGGATGACTTTCTTAACATTTTGGGTGTTCTTCATGGTACTTCTGGTTGGTTGGTTTATCATGGCTACTTACTGTTTCAAGGATCTCATCCAGT TGTAG
AA sequence Show only first row Show all	>Lus10041800 pacid=23146967 polypeptide=Lus10041800 locus=Lus10041800.g ID=Lus10041800.BGIv1.0 annot-version=v1.0 MGELVDPEQQRILDENFSGSLQIDPNRARFPYCIVWTPLPVISWLIPFIGHIGICREDGVILDFAGPNFVCVDNFAFGSVTRYFQINKEKDCDMFSHESA FIGQDEEDQYSIQKSGKDGSAWDSALTKGTQEFQHHAYSLLTCNCHSFVANNLNRLGFQSGGWNVVNLALLLLMKGRWVNTGAMLRSYLPFVIVSVFGII LGGMTFLTFWVFFMVLLVGWFIMATYCFKDLIQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	0	1
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10028350 [exp]	1.0	0.9570
AT1G33490			unknown protein		Lus10039157 [exp]	3.0	0.8708
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	4.0	0.8541
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	4.5	0.8718
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	5.3	0.8618
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	5.5	0.8665
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10030755 [exp]	5.7	0.8003
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	6.6	0.8674
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10012090 [exp]	7.1	0.8404
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	8.1	0.8651

Compare expression of checked genes

Lus10041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.