Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75500 364 / 9e-126 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 338 / 1e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 284 / 1e-94 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 198 / 5e-61 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 194 / 2e-59 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G30420 179 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 177 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 176 / 5e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 172 / 2e-51 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 171 / 2e-50 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028351 [exp] 394 / 3e-139 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010647 [exp] 379 / 1e-131 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10024301 [exp] 304 / 2e-101 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10038959 [exp] 293 / 4e-98 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 294 / 5e-98 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10003738 [exp] 194 / 2e-59 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 191 / 4e-58 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 190 / 2e-57 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 182 / 9e-55 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017800 [exp] 421 / 3e-148 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 362 / 5e-125 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 333 / 2e-113 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 306 / 2e-103 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G085100 [exp] 204 / 5e-63 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 196 / 3e-60 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 196 / 1e-59 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 194 / 2e-59 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 189 / 3e-57 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 186 / 2e-56 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10041801 pacid=23146609 polypeptide=Lus10041801 locus=Lus10041801.g ID=Lus10041801.BGIv1.0 annot-version=v1.0 ATGGCTGTTAGGATGTGGGCTTTAGCAGAGAAGATGAAGCTGCACATAGCTATGACAGTGTTCCAATTAGGGTATGCTGGGAACCATGTAATCCTCAGAG CTGCACTCAACTTGGGAATAAGCAAGCTCGTCTTCCCACTTTACAGGAATCTCGTCGCTCTGCTTTTCCTTGTCCCCTTTGCTTATTTCCTGGAGAAAAA AGATAGGCCACCACTTACATTTGGTATCTTGATGCAGTTTTTCCTCCTTGGATTTGTTGGACTGGAGAAGATTCAATTCAACAGAAGAGATGGGATGGCT AAGGTTGTTGGCACATTGACTTCCTTTATTGGAACATCAGTCATAACCTTGTACAAAGGGCCAACAATTTACAACCCAGCCGACAATTTGGTGGTCTCCT CTAATTCTAGTGCCCAAAAAAGCTGGAGTCTTGGTTGCATGTTCAACCTTGGACATTGCTTGTGTTGGTCCAGTTGGATAGTGCTGCAAGCAATGATCTT GAAGAACTACCCTGCTCCATTCTCAGTATACTCCTTCACTTGCTTCTTTGGCATACTCCAATTCCTTGTTGTTGCCTTTATTTTTGAGAGAGATTTCCAG GTTTGGCAAGTCCACTCAACCGGTGAACTCCTCAGTATTCTCTACTCGGCAATAGTTGTATCAGGGATTGGGTTTGGAATACAGATATGGGTGATCCAGA GAGGCGGACCGGTGTTTGTATCGGGGTATCTTCCTCTGCAGACCATGCTTGTTGCTGTTATGGCATCTATTGTGCTAGGAGAAGAGTTCCACTTAGGAGG GATGGTTGGAGCAATCCTGATAATAGCTGGACTGTACATGGTTCTCTGGGGGAAAAGTGAAGAGACAAAGGTTGCAGCAGTAGATGTTGAGGAGAACAAA CAGCCATTAGTAACTTCCTTTAACAAGTGA
AA sequence Show only first row Show all	>Lus10041801 pacid=23146609 polypeptide=Lus10041801 locus=Lus10041801.g ID=Lus10041801.BGIv1.0 annot-version=v1.0 MAVRMWALAEKMKLHIAMTVFQLGYAGNHVILRAALNLGISKLVFPLYRNLVALLFLVPFAYFLEKKDRPPLTFGILMQFFLLGFVGLEKIQFNRRDGMA KVVGTLTSFIGTSVITLYKGPTIYNPADNLVVSSNSSAQKSWSLGCMFNLGHCLCWSSWIVLQAMILKNYPAPFSVYSFTCFFGILQFLVVAFIFERDFQ VWQVHSTGELLSILYSAIVVSGIGFGIQIWVIQRGGPVFVSGYLPLQTMLVAVMASIVLGEEFHLGGMVGAILIIAGLYMVLWGKSEETKVAAVDVEENK QPLVTSFNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10041801 [exp]	0	1
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10012526 [exp]	6.8	0.7522
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	22.7	0.7515
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	24.8	0.7436
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	29.4	0.6698
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	38.1	0.6906
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	43.6	0.7306
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	59.9	0.6895
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10017447 [exp]	67.7	0.6906
AT5G04420			Galactose oxidase/kelch repeat...		Lus10037933 [exp]	80.9	0.6183
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	98.7	0.6456

Compare expression of checked genes

Lus10041801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.