Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66350 105 / 5e-27 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT3G51060 101 / 4e-25 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT1G19790 95 / 6e-23 SRS7 SHI-related sequence 7 (.1.2) AT1G75520 95 / 7e-23 SRS5 SHI-related sequence 5 (.1) AT5G33210 86 / 2e-21 SRS8 SHI-related sequence 8 (.1.2) AT4G36260 90 / 5e-21 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT5G12330 87 / 9e-21 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT2G18120 81 / 3e-18 SRS4 SHI-related sequence 4 (.1) AT2G21400 77 / 2e-17 SRS3 SHI-related sequence3 (.1) AT3G54430 74 / 5e-16 SRS6 SHI-related sequence 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028352 [exp] 150 / 6e-44 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10024305 [exp] 96 / 3e-23 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10003416 [exp] 94 / 2e-22 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10009697 [exp] 89 / 6e-22 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10036032 [exp] 91 / 7e-22 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10028794 [exp] 44 / 3e-05 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10017492 [exp] 44 / 3e-05 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118200 [exp] 106 / 3e-27 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.002G028500 [exp] 96 / 2e-23 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.009G070800 [exp] 96 / 3e-23 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.007G017500 [exp] 94 / 1e-22 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.001G276200 [exp] 93 / 4e-22 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.005G234200 [exp] 88 / 2e-20 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.009G121600 [exp] 85 / 4e-20 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 84 / 6e-20 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.003G196100 [exp] 84 / 3e-19 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 81 / 7e-18 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10041802 pacid=23147002 polypeptide=Lus10041802 locus=Lus10041802.g ID=Lus10041802.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTCTTCTCTTTAGGGGGGGGTGGTGGGGGAGGAGGAGGGAGGGGTAGTAGTGGAAACACAAATAATAATAATAATAATAACAATACAGAGA TCACGCCGGAGAGCAACAATAACAGTAGCTGGTTCGGCAGCTGGTACAGGCCGCCGCCAAACACGACGGAAGACAATTTCCCATCCTCCTCCTCTTCCAG ACCTGCAGCAGCTTTGGAGCTATGGCAGCAGCAGCAGCAGCAGGCGGAATTGATGCAGCGGCAACAAGATCTCTACTCTTCCGCTGCAGGTTTAGGAGTG GGACTCACTCATCATCACTTGTACCTATCTGCTGACCACCCTTCCTCCAGATCCGCCGCCGCGCTAATGATGATGCGTCCCGGCGGAGGAGGAGGAGGAG GACGAGGGTCCAGCAGTACTAGCAACGTTGGTGGTGGAATTAGTTGCCAGGACTGTGGGAACCAAGCCAAAAAAGACTGCAGCCATAGTAGATGCAGGAC TTGCTGCAAGAGCCGCGGCTACGATTGCCAAACCCATGTCAAAAGCACCTGGGTTCCTGCCGCCAAACGCCGTGAGCGCCAGCAGCAGCAGCATCATGTT ACCTCCGTCCAACAGCCACATCAGCAGCAGCATCAAGTTGTTCCCAAGCGGCCTAGAGATCCAACATCTTCATCTCTCGTCTCCCCTCCTGATTAA
AA sequence Show only first row Show all	>Lus10041802 pacid=23147002 polypeptide=Lus10041802 locus=Lus10041802.g ID=Lus10041802.BGIv1.0 annot-version=v1.0 MAGLFSLGGGGGGGGGRGSSGNTNNNNNNNNTEITPESNNNSSWFGSWYRPPPNTTEDNFPSSSSSRPAAALELWQQQQQQAELMQRQQDLYSSAAGLGV GLTHHHLYLSADHPSSRSAAALMMMRPGGGGGGGRGSSSTSNVGGGISCQDCGNQAKKDCSHSRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQQHHV TSVQQPHQQQHQVVPKRPRDPTSSSLVSPPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	0	1
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	1.0	0.9046
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	2.8	0.8211
AT1G48170			unknown protein		Lus10011844 [exp]	4.2	0.8385
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10024305 [exp]	4.5	0.8415
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	5.3	0.8668
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	16.7	0.8056
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	28.3	0.8012
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	36.9	0.7963
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	39.6	0.7876
AT5G56520			unknown protein		Lus10005700 [exp]	40.4	0.7851

Compare expression of checked genes

Lus10041802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.