Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51070 873 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 811 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 778 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 771 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 543 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 539 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 518 / 2e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 483 / 2e-159 Putative methyltransferase family protein (.1) AT2G39750 469 / 9e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 456 / 3e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028354 [exp] 1468 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 1060 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025976 [exp] 950 / 0 AT3G51070 964 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 802 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 800 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 792 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 785 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028650 [exp] 785 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019644 [exp] 750 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118100 [exp] 952 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 949 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 830 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 830 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 805 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 795 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 568 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 513 / 2e-170 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 464 / 2e-152 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 464 / 3e-152 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041804 pacid=23146796 polypeptide=Lus10041804 locus=Lus10041804.g ID=Lus10041804.BGIv1.0 annot-version=v1.0 ATGGCAATCGGACGGCCGTCTCGCTCCGGTAAGCGAGCCTCATCTTCCTCTTCTTCCTACACTTCCACTATCACCACCATTGCCTTCATCGCATTATGCG TCCTCGGCGTCTGGATGCTTACTTCCACCTCCGTCAACAACCCCCCTGCCACCACCATCAACAAGGCCGCCGTCGATTCCATATCCACCGCCGATGATGT CGCCGTCGTCGATCACGCCGCAGCCCAGTCTCGTCCCCTTGAAAATAATAACGCCAAGAAGCAGTCCGTTTTCGAAGATAACCCGGGCGATCTCCCTGCC GATGCGATTAAATCCGACGACAATAATAACAATCGTCAGGGAGATGAGAAGGTGGTGGCGGTGACGGCGGAGGAGGAGAAGGATAAGCATACTCAGATAT CGGAGGAGAGCACTATGACGACTGCTCAGAGCGTGAATCAGCAGGTCATTTCTGAGGAAACGACGCCGGTTGATACTAAAGAAGTGGAAGAAGAGAAGCC CACTTCGGATCCAGAACAGGAACCACAACCTGAGGAGGAATTAAAGGCTGAAATTAATCCTGACGACACAACTCAGAAAATCCTGACGAATCAGGGAAAT GCAGAGAACAAGCCGATGGAGACGGAAGAAGTACAGCAGAAAACCGAAGAAGTGAAATCTTTAGACGACATGCAACGGGAGCATCTGAGGAAGGAGGAGG AAAATAAAGGAATTCAGGATGCGGTCGAGGAGAAGCCGGAGAATAAGGTGACAGAGGAGGATCAAGATCAGAGGATGCATCAGCAGCAGCAACAGATGCA GGATGCTCAGAAGGTCGAAACAACGATGAATGATCAGCCGGAGGCGAAATCGGAGAAGGGTGCGGAAATTAATGAGAAAGCAGAAGAGAAGCAGATTTTC AGGGATGTGACGACTCCAGGGGTGCAAGTTCACCAGCTTGAGAATCAGGATCCTCAGCATCCTGTTCAGCAGAAGCCAAATGATGTGTCAAGTGGTGAAA CCGCGACCGGAACTTCATCGGAGATCCCTAAGGAGTCGAAGGAGTCGAAGAAGTCATGGGCGACTCAAGCCAGTGAGTCGGAGAACGAGAAAGAGAGGCG TAAAGACGATGAACCAAAAGGAGGACAGGATTTCGGTGTTTCTTGGCAGCTCTGTAATGTTACGACGGGGAGTGATTACATTCCTTGTTTGGATAACGAT AAGGCGATCAAGAAACTGAGGTATACAGGGCATTTCGAGCACCGGGAGAGGCATTGTCCTGAGGAACCTCCGACTTGTTTGGTCCCTGGTCCTCAAGGAT ACAAAACCCCCATCTCTTGGCCAAGTAGCAGAGACAAGATATGGTACAACAATGTTCCTCGCACACAATTGGCTGAATATAAGGGACATCAGAACTGGGT TAAGGTGACTGGGGAGTTCCTGACATTCCCAGGAGGTGGGACTCAGTTCATCCATGGAGCTCTGCAATACATTGATTTCCTCCAGAAGGCAGTTCCAAAG ATTGGATGGGGGAAACACACCAGAGTGATTTTGGATGTTGGATGTGGAGTTGCGAGCTTTGGAGGCTACATCTTCGAGAGGGATGTTCTTACGATGTCGT TTGCACCCAAGGATGAACACGAAGCACAAGTTCAGTTTGCGTTAGAGAGAGGGATTCCTGCAATATCAGCTGTAATGGGATCCAAACGGCTGCCATTCCC GAGTAATGTGTTTGATGCTATTCATTGTGCTCGATGCAGGGTCCCCTGGCATAACGAAGGAGGTCTGTTGCTTCTGGAATTGAATCGTCTCCTGCGTCCC GGAGGCTACTTTATCTGGTCAGCAACTCCAGTGTACCAAAAGTTAAAAGAAGATGTCGAAATATGGCAAGCGATGTCTGCATTAACGGTTTCAATGTGTT GGGATCTTGTGACAATCAAGAGAGACAAACTTAATAAGATTGGAGCTGCTATTTACCGGAAGCCAATCAACAATGATTGCTATGATCAGAGAAAAAAGAA TGTGCCTCCAATGTGTCCAAATGATGATGATCCAAGTGCTGCATGGTCTGTGCCGTTGCAGGCATGCATGCACAGAGTGCCATCCGAGCCAAGTCTCCGA GGCACTCAATGGCCGGATGAATGGCCTGCCAGATTACAGAAACCTCCTTACTGGTTGAATAGCTCTCAGATGGGGATCTATGGCAAACCAGCTCCTCAAG ACTTCACAACTGACTATAAACACTGGAAAAGTGTGGTGACTAATACTTACATGAAAGGATTGGGAATAAATTGGGATGGGGTGAGAAATGTTATGGACAT GAGGGCTGTTTATGGAGGTTTCGCAGCAGCACTGAAGGATATGAAGGTCTGGGTTTTGAACGTGGTGAACGTAGATTCTCCAGACACACTTCCAATAATA TACGAAAGAGGGCTGTTCGGAATTTACCATGATTGGTGTGAATCCTTCAGCACATACCCTCGGACTTATGATCTGCTCCATGCTGATCATCTCTTCTCGA AGCTAAAATCCAGGTGCAAGCTCGTACCTGTATTGATAGAGGTTGACAGAGTGCTAAGACCAGGAGGTAAGTTCATTGTCCGAGACGAATCAGATACAAT AGGGGAAGTGGAAAATATACTAGAGTCTCTGCACTGGGAGGTTCACGTGACCTTCTCCAAGGACCAAGGTGTTCTTAGCGGACAGAAAGGTAACTGGCGG CCAGACACAATTGCAGCTTCCTCATGA
AA sequence Show only first row Show all	>Lus10041804 pacid=23146796 polypeptide=Lus10041804 locus=Lus10041804.g ID=Lus10041804.BGIv1.0 annot-version=v1.0 MAIGRPSRSGKRASSSSSSYTSTITTIAFIALCVLGVWMLTSTSVNNPPATTINKAAVDSISTADDVAVVDHAAAQSRPLENNNAKKQSVFEDNPGDLPA DAIKSDDNNNNRQGDEKVVAVTAEEEKDKHTQISEESTMTTAQSVNQQVISEETTPVDTKEVEEEKPTSDPEQEPQPEEELKAEINPDDTTQKILTNQGN AENKPMETEEVQQKTEEVKSLDDMQREHLRKEEENKGIQDAVEEKPENKVTEEDQDQRMHQQQQQMQDAQKVETTMNDQPEAKSEKGAEINEKAEEKQIF RDVTTPGVQVHQLENQDPQHPVQQKPNDVSSGETATGTSSEIPKESKESKKSWATQASESENEKERRKDDEPKGGQDFGVSWQLCNVTTGSDYIPCLDND KAIKKLRYTGHFEHRERHCPEEPPTCLVPGPQGYKTPISWPSSRDKIWYNNVPRTQLAEYKGHQNWVKVTGEFLTFPGGGTQFIHGALQYIDFLQKAVPK IGWGKHTRVILDVGCGVASFGGYIFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSKRLPFPSNVFDAIHCARCRVPWHNEGGLLLLELNRLLRP GGYFIWSATPVYQKLKEDVEIWQAMSALTVSMCWDLVTIKRDKLNKIGAAIYRKPINNDCYDQRKKNVPPMCPNDDDPSAAWSVPLQACMHRVPSEPSLR GTQWPDEWPARLQKPPYWLNSSQMGIYGKPAPQDFTTDYKHWKSVVTNTYMKGLGINWDGVRNVMDMRAVYGGFAAALKDMKVWVLNVVNVDSPDTLPII YERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKSRCKLVPVLIEVDRVLRPGGKFIVRDESDTIGEVENILESLHWEVHVTFSKDQGVLSGQKGNWR PDTIAASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	2.2	0.7701
AT2G15220			Plant basic secretory protein ...		Lus10026582 [exp]	5.5	0.6458
					Lus10029758 [exp]	7.1	0.7300
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	7.2	0.7348
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10038667 [exp]	7.4	0.7106
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10006431 [exp]	9.4	0.6294
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	18.7	0.6713
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	19.8	0.7171
					Lus10038304 [exp]	21.0	0.6507
AT2G22590			UDP-Glycosyltransferase superf...		Lus10026412 [exp]	22.6	0.5799

Compare expression of checked genes

Lus10041804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.