Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 184 / 4e-49 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 141 / 2e-35 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 122 / 3e-29 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028358 [exp] 1156 / 0 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10033185 [exp] 192 / 2e-51 AT3G54350 292 / 4e-87 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10010629 [exp] 176 / 1e-45 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117900 [exp] 291 / 2e-87 AT3G54350 208 / 5e-57 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.007G016900 [exp] 289 / 1e-86 AT3G54350 206 / 1e-56 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G234300 [exp] 182 / 4e-48 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.002G028300 [exp] 177 / 2e-46 AT3G54350 333 / 2e-102 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10041808 pacid=23146661 polypeptide=Lus10041808 locus=Lus10041808.g ID=Lus10041808.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCGGCTGCGTCGTTTTCAGCTCGTATGCCATGGATTCCGGAAGACGACCTCCTGCTGAAGAACGCCGTTGAGTATTCTGGGCGTGTCGTTA ATTTGCAGGCAGGTGCTTCTTTGGAAGCACTTGCGAAGGGCGCGGTCCGATTCTCTCGCAGGTTTACGGTTCGGGAGTTGCGGGATCGGTGGCACTCTTT GCTCTATGACGCTGATGTATCGGCTGAAGCTTCTGTTCGAATGGCTGAGCTTGAGCTTTCTGCTGCTAATGTTTTGTCTTTATCATCGTCATCAAAGCTC CATAAGACCGTTACGAATAGGGAAAATGGAGAGTGTTCTGCTAAAAGGAAGCCAGAAATGGAAAGTATTCGACGAATGTACTATGCAATGAAGAAAAAGG AGAAGAAGAGGCGTAAGCAGTATTGGAGCGAGTGTTCTCCTGATTTCAGTTTACTCGGGGCACCAAAAGTGGATGAAACTGGTCTAACTTGTAGTCAGAA CCCTGTTGGATTTGTTGTCAAGGAAGAACGTGAGGATATGTCTATGGAGATTCCCTCCTTTAAGCAAGATGACCTGGGCGCCAGTATTGTAGATGGACTT TTGGAGCTCCAGAGCAGCTGTATTGTTGCGGAAATGAAAGAAGCGGAAATAGTGCCAAAGGTTCCTCTGTGGGGAGAACATGAGGATACGCCTCCATCTG AATTGAAAGTTCATGGAAGTCCACATGATGAAAGTAAGGGTAAAGAAGCACCGCTGGGACATCATGATGATGCGAATGGTAGTAAAAATAACTCAAGTTT GCCGGATGAAAAGAATGTTGCTATTGATATTTCAACTTCCATCTTGGAATCTGAGTTTGCAATTTCTGACTCAGCGCTTAACTCTGGGAATGAAAAAGGG CTTGTTTGCATGGATTCAGATAGGAAAGATACAGTAGACATATCATGCATTGATAATGTAGATTCAGTGGTATCGAGTTGTTCGAATAATAAACACGACG TGGAAGCAACAAGTGTTGCAGGATCACAGGATGCAGTCGCAAAAGCAGGTCTATCGACAGCTTCTGGTGCTTCTCCTACAGAATGGGAGGTTGCTACTGA TAAGCATAGCATGAATTCTGCTGATGTTAAGGAACCGGCATCCAACTTAGCACCAAGTACTTCTTCTGCTGAATCTAACTTCGAAGAGATTATGTGCGTA TTAAACACTGAAGATCCTGAAGTTCCTTGCAACGATCACATTGTACCGTCAAAGCTCCGTGATTCTTCCGTGAGACAGACATCCTCGCTTACTGGTCAAA AGGATGGCACCGTGACTGAAAAAAGAGTTGTAAACTCTGTGAAGAAAGACAGAAATGTTAAAGCGTCTCTTTCTATCTCCCAGAGAAAGTGTTCAAATAC ACGTACAGTCAATGACACCATTAGTTCTGGGATGAAATGCAAGTCTTTTGATGGTAAAATCCAAGTTCCCGTCTTTGAGCAAGCTAGCATATCCACTGGA GGCCTGAATCAATCAAGATTACTAAAGCCTTCTCCATGTTTAACCACAGATGGGGTTCTAAACGGCAAGTTTGAATCTGCACCGGCTGCCTCTTCTCCGG TAGCCACTTTAATACCAGAAGGAGACCGCTCAACATTGGATGCGCCAGAATTTGAGAGTGACGAGGATGATGTTCCGTCCTTTTCTGAGATTGAGTCCAT GATACTTGATATGGACTTGTGGCCTGATGATCAAGATTCATACCTTGACAGGGAAGTCTTAAGGTATCAGAGTGAGGATAGCAAGAGAGTGATGATGAGG TTGGAACAGTGTGCAAAATCGTCCACAGAAAGAGCAATAGTATCCCGCGGCGCACTTGCACTCTTATATGGCCGTTACTTGAAGCATTATATGAGAGATA CTGAGGTAATACTTGGCAGAGCAACAGATGATATGGATGTTGATATAGACTTGGGACTTGAGGGACCTGCAAACAAAATATCAAGGCGTCAGGCTATCAT TAAGATGGAAGGGGATGGATCTTTTCTTCTTAAAAATCTTGGAAAAAGTCCAATGTTTATCAATGGCAAAGAACTCCCAACAGGGCAGAGTGCTTCTCTC AGTTCTAGTAGTTTGATTGAGGTCAACTCAATTTAG
AA sequence Show only first row Show all	>Lus10041808 pacid=23146661 polypeptide=Lus10041808 locus=Lus10041808.g ID=Lus10041808.BGIv1.0 annot-version=v1.0 MAAPAASFSARMPWIPEDDLLLKNAVEYSGRVVNLQAGASLEALAKGAVRFSRRFTVRELRDRWHSLLYDADVSAEASVRMAELELSAANVLSLSSSSKL HKTVTNRENGECSAKRKPEMESIRRMYYAMKKKEKKRRKQYWSECSPDFSLLGAPKVDETGLTCSQNPVGFVVKEEREDMSMEIPSFKQDDLGASIVDGL LELQSSCIVAEMKEAEIVPKVPLWGEHEDTPPSELKVHGSPHDESKGKEAPLGHHDDANGSKNNSSLPDEKNVAIDISTSILESEFAISDSALNSGNEKG LVCMDSDRKDTVDISCIDNVDSVVSSCSNNKHDVEATSVAGSQDAVAKAGLSTASGASPTEWEVATDKHSMNSADVKEPASNLAPSTSSAESNFEEIMCV LNTEDPEVPCNDHIVPSKLRDSSVRQTSSLTGQKDGTVTEKRVVNSVKKDRNVKASLSISQRKCSNTRTVNDTISSGMKCKSFDGKIQVPVFEQASISTG GLNQSRLLKPSPCLTTDGVLNGKFESAPAASSPVATLIPEGDRSTLDAPEFESDEDDVPSFSEIESMILDMDLWPDDQDSYLDREVLRYQSEDSKRVMMR LEQCAKSSTERAIVSRGALALLYGRYLKHYMRDTEVILGRATDDMDVDIDLGLEGPANKISRRQAIIKMEGDGSFLLKNLGKSPMFINGKELPTGQSASL SSSSLIEVNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	1.4	0.8669
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	3.0	0.8705
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	10.1	0.8003
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	10.4	0.8464
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	10.4	0.8351
AT5G58510			unknown protein		Lus10031287 [exp]	14.0	0.8456
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	19.6	0.7996
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	20.1	0.8498
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	20.4	0.8265
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	21.4	0.8552

Compare expression of checked genes

Lus10041808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.