Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66320 147 / 6e-43 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 142 / 5e-41 GATA GATA6 GATA transcription factor 6 (.1) AT4G36240 130 / 3e-37 GATA GATA7 GATA transcription factor 7 (.1) AT4G34680 122 / 7e-34 GATA GATA3 GATA transcription factor 3 (.1.2) AT3G24050 120 / 3e-33 GATA GATA1 GATA transcription factor 1 (.1) AT2G45050 117 / 3e-32 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 115 / 1e-31 GATA GATA4 GATA transcription factor 4 (.1) AT4G32890 117 / 2e-31 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 115 / 7e-31 GATA GATA12 GATA transcription factor 12 (.1) AT1G08010 114 / 3e-30 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031096 [exp] 128 / 8e-38 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10023684 [exp] 125 / 8e-36 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011762 [exp] 124 / 1e-34 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10037398 [exp] 123 / 5e-34 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10028360 [exp] 117 / 5e-32 AT5G66320 116 / 6e-31 GATA transcription factor 5 (.1.2) Lus10041313 [exp] 116 / 2e-31 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10028178 [exp] 116 / 2e-31 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10016092 [exp] 115 / 2e-31 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10021466 [exp] 115 / 2e-31 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117600 [exp] 153 / 4e-45 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.009G123400 [exp] 150 / 6e-44 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.007G016600 [exp] 145 / 2e-41 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.004G161500 [exp] 136 / 8e-39 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.003G174800 [exp] 124 / 1e-34 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.001G188500 [exp] 124 / 4e-34 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.001G053500 [exp] 122 / 8e-34 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.002G142800 [exp] 119 / 6e-33 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.004G211800 [exp] 119 / 3e-32 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.014G058600 [exp] 117 / 3e-32 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10041810 pacid=23146884 polypeptide=Lus10041810 locus=Lus10041810.g ID=Lus10041810.BGIv1.0 annot-version=v1.0 ATGGACTCCAATTCGGAGTACTCGGCGCCGTTCCCCGCCGGTATTGTCCCTCAGAAGGCCAAGAGTGAAATCAATTTTGAGCCGGTGGTGGAGGAGGAGC CTTGTTTCAAGTCCCCTGTCCCGGCGAAGGCGAGAAGCAAACGGACCCGAACAGGTATTCGGGTCTGGTCTCTCGGGTCAACAACCCTGACGGATTCCTC CTCGAGTTCAACCTCCTCTTCGTCTTCCTCTTCCAGCCCGTTGAGTTGCCCATGGGTCATCTGCACGGTCAACACTCAGGGCAGCTTCAGCCTCGAACAG AACGAGAAGCCGGCGGCGAAAAATAAGCCGAAGAAGCGGCGGCCTTCTTTGGACTGCGGGAACAACAACAACAACAATAACAACGCGAATAACAGCGCGG CTCCGCCGCCGCGGAGGTGCAGCCATTGCGGGGTGCAGAAGACTCCACAGTGGAGAAGTGGTCCCCTGGGGGCGAAGACTTTGTGCAATGCATGTGGAGT CCGGTTCAAGTCGGGCAGGCTGCTACCTGAGTACCGACCCGCTTGCAGCCCGACTTTCTCGAGCGAGTTGCACTCCAACCACCACCGTAAGGTGCTGGAG ATGAGGAAGAAGAATGAGGTGCCGGGTCAGGCGGAGCCCGATTTGGGTCCGAGTGTAGTGCCCAGTTTTTGA
AA sequence Show only first row Show all	>Lus10041810 pacid=23146884 polypeptide=Lus10041810 locus=Lus10041810.g ID=Lus10041810.BGIv1.0 annot-version=v1.0 MDSNSEYSAPFPAGIVPQKAKSEINFEPVVEEEPCFKSPVPAKARSKRTRTGIRVWSLGSTTLTDSSSSSTSSSSSSSSPLSCPWVICTVNTQGSFSLEQ NEKPAAKNKPKKRRPSLDCGNNNNNNNNANNSAAPPPRRCSHCGVQKTPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLE MRKKNEVPGQAEPDLGPSVVPSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10041810 [exp]	0	1
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	5.3	0.8035
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	11.2	0.7867
					Lus10029097 [exp]	13.4	0.7730
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	14.4	0.7536
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	15.5	0.7628
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	19.1	0.7821
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	22.0	0.8013
AT1G42430			unknown protein		Lus10021819 [exp]	27.7	0.7317
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	33.3	0.7746
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	40.2	0.7472

Compare expression of checked genes

Lus10041810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.