Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 595 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 487 / 2e-169 Cytochrome P450 superfamily protein (.1) AT3G26310 263 / 3e-82 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G07990 257 / 9e-80 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26300 252 / 7e-78 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26290 248 / 3e-76 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26320 245 / 2e-75 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48320 242 / 4e-74 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G26330 241 / 1e-73 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25120 238 / 1e-72 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028361 [exp] 750 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 666 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 657 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 616 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 616 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 607 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 596 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 466 / 9e-163 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10016601 [exp] 301 / 1e-96 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 640 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 637 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 564 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G085000 [exp] 297 / 1e-94 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 293 / 6e-94 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 293 / 8e-94 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.008G223500 [exp] 291 / 6e-93 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.003G066400 [exp] 285 / 3e-90 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 282 / 2e-89 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G082900 [exp] 282 / 2e-89 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041811 pacid=23146905 polypeptide=Lus10041811 locus=Lus10041811.g ID=Lus10041811.BGIv1.0 annot-version=v1.0 ATGGAATTCCTCCAACCCATCCTCTACCTAATTATCCCTCTCCTCCTCCTCCTCATCGCCAGCCGCAGTCGTAGTAGCCGCCTCCCTCTCCCGCCGGGTC CCAATGGGCTCCCGATCATTGGCAACATGCTGATGATGGACCAGCTCACCCACCGTGGGCTGGCCCAGCTGGCAAAGAAGTACGGAGGAATATTCCACCT CAAGATGGGCACCAGCGTCCACGTCATCGCCGTCTCTTCCCCTGAAGTCGCCCGTGAGGTCCTCCAGGTCCACGACAGCATCTTCTCCAACCGCCCAGTC AACGCCGCCATAGCCTACCTAACCTACGACCGCTCCGACATGGCCTTCGCCAACTACGGGCCCTTCTGGCGGCAGATGCGCAAGATCTGCGTCATGAAGC TCTTCAGCCGCAAGCGGGCGGAATCGTGGGACTCAGTCCGTGACGAGGTCGACTCCATGGTCCAGACCGTTAAGGTCAACGCTGGCCGAGCGTTGAACGT CGGGGAGCTGATTTTCACGTTGACCATGAACATTACTTACAGGGCGGCGTTCGGGTGCAAGAACGAAGGACAGGATGAGTTTATTAAGATACTTCAGGAG TTCTCCAAGCTTTTTGGGGCTTTTAATATTGCCGATTTTATCCCTTGCCTCGGCTGGATGGACCCACAGGGTCTTAAGTCCAGGCTTGTGAAGGCTAGGG GTGATTTGGACAAATTTATTGATCAAATCATGGAGGAGCATATCGAGAAGAGGAGGCTAAACGGCGGCGTACAGGCTGACCATGCTATCTCTGACATGGT TGATGACTTGCTTGCTTTCTATAGCGAAGATCAAGACGCCGGTAAAGTTTGGGACTCCGACTCTCTTAAACTCACCAAGGATAACATCAAAGCCCTCATC ATGAGCCCCGATGATCTACGACGGGTCCAGGAAGAGCTGGAGGAGGTCGTGGGACTGGACCGCCTGGTGGAAGAGTGCGACTTCGAGAAGCTGACCTTCC TCAAGTGCGTGTTGAAGGAGACGCTTCGCCTCCACCCGCCGATTCCTCTCCTCCTCCATGAGACGGCGGAGGATGCTGAGGTGTCCGGCTACTTCATCCC CAAGAGGTCAAGGGTCATGGTCAACGCTTTCGCGATCGGACGAGACCCGAACTCGTGGTCTGACCCGGATTCTTTCAACCCGGCTAGGTTTTTGAAGGAT GGGATGCCCGATTTCAAAGGTGGTAATTTCGAGTTCCTGCCGTTCGGGTCGGGTCGGAGGTCGTGCCCAGGGATGCAGCTTGGATTGTATGCGCTGGAGC TAGGGGTGGCCCACCTGCTACACTGTTTCAAGTGGGAGTTGCCAGATGGGATGAAGCCGAGTGACGTGGATATGAGCGATGTTTTTGGACTTACCGCGCC ACGCGCAACACGACTCATCGCTGTACCAAGCCTGAAATTGGCGTGTCCCTTGTAA
AA sequence Show only first row Show all	>Lus10041811 pacid=23146905 polypeptide=Lus10041811 locus=Lus10041811.g ID=Lus10041811.BGIv1.0 annot-version=v1.0 MEFLQPILYLIIPLLLLLIASRSRSSRLPLPPGPNGLPIIGNMLMMDQLTHRGLAQLAKKYGGIFHLKMGTSVHVIAVSSPEVAREVLQVHDSIFSNRPV NAAIAYLTYDRSDMAFANYGPFWRQMRKICVMKLFSRKRAESWDSVRDEVDSMVQTVKVNAGRALNVGELIFTLTMNITYRAAFGCKNEGQDEFIKILQE FSKLFGAFNIADFIPCLGWMDPQGLKSRLVKARGDLDKFIDQIMEEHIEKRRLNGGVQADHAISDMVDDLLAFYSEDQDAGKVWDSDSLKLTKDNIKALI MSPDDLRRVQEELEEVVGLDRLVEECDFEKLTFLKCVLKETLRLHPPIPLLLHETAEDAEVSGYFIPKRSRVMVNAFAIGRDPNSWSDPDSFNPARFLKD GMPDFKGGNFEFLPFGSGRRSCPGMQLGLYALELGVAHLLHCFKWELPDGMKPSDVDMSDVFGLTAPRATRLIAVPSLKLACPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	0	1
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	2.6	0.9591
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10028361 [exp]	4.4	0.9306
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031208 [exp]	4.9	0.9561
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	8.1	0.9586
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	9.2	0.9460
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	9.2	0.9543
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	12.0	0.9420
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	14.0	0.9353
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	14.7	0.9536
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	16.2	0.8951

Compare expression of checked genes

Lus10041811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.