Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16460 253 / 8e-85 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) AT3G51090 248 / 4e-82 Protein of unknown function (DUF1640) (.1) AT2G35090 50 / 2e-07 Protein of unknown function (DUF1640) (.1) AT2G35070 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042073 [exp] 195 / 3e-61 AT2G16460 252 / 4e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10018079 [exp] 192 / 2e-60 AT2G16460 252 / 3e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123700 [exp] 256 / 4e-86 AT2G16460 352 / 2e-124 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Potri.007G016300 [exp] 251 / 7e-84 AT2G16460 311 / 2e-108 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07798 [flax] [poplar] DUF1640 Protein of unknown function (DUF1640)
Representative CDS sequence Show only first row Show all	>Lus10041812 pacid=23146782 polypeptide=Lus10041812 locus=Lus10041812.g ID=Lus10041812.BGIv1.0 annot-version=v1.0 ATGGCTGTAGCCGTTGTTTGTAGGCGTGTCGGCCAATTAGGGATGATTAGTAGAAACGGAGGATTTAGATTTGGTGCCGCTGTGTCTGGCAGTTTTCCAC CGGTAGAAAGTAAATTCTGCAACCGCTTCGGTGGTTATAACCGGAAGATATCCGATCTGGTTAAAGCCAACGGAAATCACGTGTTCCTCGTCGACACATT AGCACTTGCGCGGATGTTAGAGGAGGGAGGAGTGCCGTCGAAGCAAGCGGAAGTGATAACCGCCGCGATGACGAAGGTCTTGAATGATAGCTTTGTAAAT ATGACGCAGTTAGTTGTTTCCAAGGCCGAAATGCAGAGGACGGAGATGATCCAAGAAACGAACCTGTGTAAGTTCAAAACGGAAATTCAAACCAGACAGG AACATCATTTCTCATTGTTCCAACATGAGGCGGAGAAGATGCACAATGCGATTGAGAAGAGCACAGAGAAAACACAAAATGACATTGACAAGACCCGAAG CAACCTCAAACATGAAATAGACAAGGTCAATGCCGGTCAACGACTCGATTGGAACCTTGAGAAAGGGAGGTTACGTGATGACATGGCACATCAAAGTACT CAAATCACTAACCTGGATAACAAGTTTGACCGGGAGTTGCATTCACAGAAGGCCCAATGGGAAGCAGCGAAATACGATATGACAAAGTACTTCGTCGGCA CTTTGTTCTCCATTTCTGCCGTGGGTCTTGCTGTCGTTCGCATCTTGATGCCATTGCTCGTCTCTTCTCTGCTTGTGTGGATGGTCCCCAACTAA
AA sequence Show only first row Show all	>Lus10041812 pacid=23146782 polypeptide=Lus10041812 locus=Lus10041812.g ID=Lus10041812.BGIv1.0 annot-version=v1.0 MAVAVVCRRVGQLGMISRNGGFRFGAAVSGSFPPVESKFCNRFGGYNRKISDLVKANGNHVFLVDTLALARMLEEGGVPSKQAEVITAAMTKVLNDSFVN MTQLVVSKAEMQRTEMIQETNLCKFKTEIQTRQEHHFSLFQHEAEKMHNAIEKSTEKTQNDIDKTRSNLKHEIDKVNAGQRLDWNLEKGRLRDDMAHQST QITNLDNKFDRELHSQKAQWEAAKYDMTKYFVGTLFSISAVGLAVVRILMPLLVSSLLVWMVPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16460			Protein of unknown function (D...		Lus10041812 [exp]	0	1
AT5G13825			unknown protein		Lus10000042 [exp]	2.2	0.9840
AT3G19010			2-oxoglutarate (2OG) and Fe(II...		Lus10004245 [exp]	2.4	0.9736
					Lus10002411 [exp]	3.2	0.9834
					Lus10019564 [exp]	3.5	0.9812
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10013532 [exp]	3.6	0.9441
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	5.7	0.9788
					Lus10020194 [exp]	6.3	0.9705
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031007 [exp]	6.7	0.9747
					Lus10014195 [exp]	7.9	0.9719
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	8.1	0.9607

Compare expression of checked genes

Lus10041812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.