Plant FIBer expression Database

Lus10041813 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51100 164 / 3e-51 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028362
[exp]
265 / 4e-91 AT3G51100 139 / 9e-42 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G117400
[exp]
195 / 3e-63 AT3G51100 216 / 3e-71 unknown protein
Potri.007G016200
[exp]
184 / 5e-59 AT3G51100 210 / 5e-69 unknown protein
PFAM info
Representative CDS sequence
>Lus10041813 pacid=23146606 polypeptide=Lus10041813 locus=Lus10041813.g ID=Lus10041813.BGIv1.0 annot-version=v1.0
ATGGAGCCGACTAAAGAATTCGATGGTGGCGGAGGCGAGGACGATCAGAAAGCTAATCAAATCCACAATCTGAAGGAAGTCAAGCGTGCAGCAGACGGAG
GAGGTTTGAAGGGGAAATCCTGTTCGGGTTACCTTTATTATACTACCGCCCTCAAATCCAACGGCAAGAATCCTCGATGCATCGGCATCCCTCGCACCCT
CCCTTCCGTGCCAAACTATATTGGAAAAAATGAGGAGGCAGTTGGTGTAGAGAACAGTAAATTCTACTACGGGTGTGCGGGATATTCTGTATACATTAAG
GATGACCATTTAGCAGATAAACAGGAGTCAAAGACGCAATTACCTGTCTGTTTAGGCCTGGAGCTTCTCATTAATAGAAAACCAGTGACTGCCACGGATG
CTCGCAGTCCAGCTCCTGTTCACCATAGTCCAGCTCCTGCTCACCATAGACAAGAAGAGCGGGAGTCACGTCCTCCTCAGATTCAGACGCCTAAACCAAC
ACAGTTTACAAGGAACGCTAACCTGGTAGCGTCAGGAGTTACGAGGAACATGAGGAGAGTAGGGAACCAGATAAAAGACACTGTTGAAGACATATTCTTC
CCGTACAAAAGACGTCCGAAATGA
AA sequence
>Lus10041813 pacid=23146606 polypeptide=Lus10041813 locus=Lus10041813.g ID=Lus10041813.BGIv1.0 annot-version=v1.0
MEPTKEFDGGGGEDDQKANQIHNLKEVKRAADGGGLKGKSCSGYLYYTTALKSNGKNPRCIGIPRTLPSVPNYIGKNEEAVGVENSKFYYGCAGYSVYIK
DDHLADKQESKTQLPVCLGLELLINRKPVTATDARSPAPVHHSPAPAHHRQEERESRPPQIQTPKPTQFTRNANLVASGVTRNMRRVGNQIKDTVEDIFF
PYKRRPK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51100 unknown protein Lus10041813
[exp]
0 1
AT4G11560 bromo-adjacent homology (BAH) ... Lus10008492
[exp]
3.2 0.8908
AT4G08240 unknown protein Lus10009881
[exp]
3.3 0.9199
AT3G07440 unknown protein Lus10009585
[exp]
4.9 0.8841
AT3G10400 U11/U12-31K U11/U12-31K, RNA recognition m... Lus10037960
[exp]
9.0 0.8497
Lus10012330
[exp]
9.2 0.8625
AT1G04760 ATVAMP726 vesicle-associated membrane pr... Lus10025933
[exp]
10.8 0.8824
AT4G14385 unknown protein Lus10003559
[exp]
10.8 0.9008
AT3G21865 PEX22 peroxin 22 (.1) Lus10039690
[exp]
11.7 0.8949
AT2G45250 Integral membrane protein hemo... Lus10023933
[exp]
15.0 0.8281
AT5G47090 unknown protein Lus10035047
[exp]
17.2 0.8914

Lus10041813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.