Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36210 604 / 0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) AT2G18100 593 / 0 Protein of unknown function (DUF726) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028363 [exp] 951 / 0 AT4G36210 813 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10024307 [exp] 473 / 5e-159 AT4G36210 608 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10033181 [exp] 437 / 4e-145 AT4G36210 605 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10010626 [exp] 236 / 4e-70 AT4G36210 376 / 2e-125 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10033916 [exp] 184 / 7e-50 AT2G18100 416 / 5e-138 Protein of unknown function (DUF726) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016100 [exp] 646 / 0 AT4G36210 657 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05277 [flax] [poplar] DUF726 Protein of unknown function (DUF726)
Representative CDS sequence Show only first row Show all	>Lus10041814 pacid=23146988 polypeptide=Lus10041814 locus=Lus10041814.g ID=Lus10041814.BGIv1.0 annot-version=v1.0 ATGGAGACTTCTACTCCGTCGATTCTGCCTCCGACTCAGAGGTACGCCGCCGGAGCATTATTCGCCCTAGCTCTTCATCAGGCGCAGATCCACCAAACCC GCCCATTGGGCCTGTTCGTCGAGGAAGTTCCCGGCGATGCCGATCGAGCCAGTTTTAGTAGTAACAGTAGCGACTCCGTTTCCGAGGATCCTGATCTTTG GGTTCACGAGAAATCCGGTCTCCTCCGCCTCGTTTTCAGATTTTTGGAGATCGATTCTTCTGCATGGTCTGGACTGGAGGAGACAGCTGGTTCTGCTGCA GCTAGGCGTCATATTGGAGCTTTCTTGAGGTTACTTACTGAAGACAGCGACGACCCTTCTCAGAATACTGATAAAGAGATTGCTCTGTCAAAAGCTATTG ATGCTACAGAACAAACCATGGAAACTAACCGAGTGTCGTACAGGTCTAAGAAGAAGAAGCATCGAGAGTATGAAAATGAGTGTCGTGAGAAATTATCCTC TGACAATAAGCAACCTGATTCTGATGCTCCGGACGTACCTTTTTTTTCTCCAAATGAGACTGCCTCTACTACGCCTAGTTCTAATAGCCCTAGGAGTCCG GACAAGGACTCGAGCATCAAAGTTGATGATAAACCTATTGAAGAGGTAATGATGATTAGTTACCACAGGAAAGTCACAGTTCTTTATGAGCTTCTTTCAG CTTGCCTGGCAGATATACACAATGACAGCAAGTCGAGTACTAGGCGAAGAAAGGGTTATGATGCTAGACATCGTGTGGCTTTGAGGCTGCTGTCAACATG GCTGGATATCAGTTGGATAAAAATGGAAGCCGTCGAGACAATGGTAGCTTGCTCAGCAATGGCTATTCTGAAACAGCAAGAGTCAAAGGAAGAAACCCAA TCTTCAAGCAAATGGGCTAAAATCAAACGTGGTAGCATCATTGGTGCAGCTGCAATAACTGGAGGAGCCTTAATGGCGATTACTGGCGGTTTAGCTGCTC CTGCAATTGCTGCAGGGTTTGGTGCCCTAGCTCCAACTTTGGGCACTCTTATACCTGTGATTGGAGCAAGTGGGTTCGCAGCAGCTGCAACAGCTGCAGG AACGCCAGCTGCCGGAGCTGGCCTAGCAGGGACCAAGATGGCTCGAAGAACTGGAAGCATAGAAGAATTTGAGTTCAAAACGATGGGAGACAGCCATAAT CAAGGCCGACTAGCGGTTGAAATCATGATATCTGGATTTATCTTTGACGAGGAAGATTTCTTCAAGCCGTGGGAAGGATTAACTGACAACTTGGAGAGGT ATGCTCTGCAGTGGGAATCAAAGAATCTAATTGCAATTAGCACTGCAATTCAGGATTGGTTTACGTCAACAATTGCATCACAGCTGATGAGGCAAGGTGC GATGCTGACTGTGATGGCCGCACTTATGGCAGCCCTATACTTGCCAACAACAATACTTTCAGCTACAAGCTTCATCGACAGTACGTGGACAATTGCCATT GATAGGCCTGTTACGCTGGTGGGGTACTCGCTTGGAGCTCGAGTGATCTTCAAGTGTCTCCAGACATTGGCCGAAACAGAACACAGCGCTGAACTAGTAG AGAGAGTTGTTCTCCTGGGAGCTCCCGTGGCTATCAAAGACGAGAACTGGGAAGCTGCAAGAAAGGTGATTCTTTCGTCAGCCAACACTCACTCGGCAGT GCCGCATTGTTGTCTAACCACCGATAAAGATGTCTCATCTGCTTTCACTTTATTGCAGATGGTAGCAGGAAGATTTGTGAATGCCTACTCAACAAACGAC TGGATGCTTGGAATTGCTTTCCGAGCAAACCTACTTACACAAGGCTTAGCCGGGATTCAGCCAATAGAAGTCCCTGGAATTGAGAATGTTGATGTTACTG AATACATTGAAGGCCACTCCTCGTATCTCTGGGCCACACAGGACATTTTGGAACAACTGGATTTGGACACGTATTTCCCAGTTTTCAGGAACGCTCCCTT GAGCCCAAGTCGACGCCCTGGTGCTTCGAAAGGAGAAGAGTAG
AA sequence Show only first row Show all	>Lus10041814 pacid=23146988 polypeptide=Lus10041814 locus=Lus10041814.g ID=Lus10041814.BGIv1.0 annot-version=v1.0 METSTPSILPPTQRYAAGALFALALHQAQIHQTRPLGLFVEEVPGDADRASFSSNSSDSVSEDPDLWVHEKSGLLRLVFRFLEIDSSAWSGLEETAGSAA ARRHIGAFLRLLTEDSDDPSQNTDKEIALSKAIDATEQTMETNRVSYRSKKKKHREYENECREKLSSDNKQPDSDAPDVPFFSPNETASTTPSSNSPRSP DKDSSIKVDDKPIEEVMMISYHRKVTVLYELLSACLADIHNDSKSSTRRRKGYDARHRVALRLLSTWLDISWIKMEAVETMVACSAMAILKQQESKEETQ SSSKWAKIKRGSIIGAAAITGGALMAITGGLAAPAIAAGFGALAPTLGTLIPVIGASGFAAAATAAGTPAAGAGLAGTKMARRTGSIEEFEFKTMGDSHN QGRLAVEIMISGFIFDEEDFFKPWEGLTDNLERYALQWESKNLIAISTAIQDWFTSTIASQLMRQGAMLTVMAALMAALYLPTTILSATSFIDSTWTIAI DRPVTLVGYSLGARVIFKCLQTLAETEHSAELVERVVLLGAPVAIKDENWEAARKVILSSANTHSAVPHCCLTTDKDVSSAFTLLQMVAGRFVNAYSTND WMLGIAFRANLLTQGLAGIQPIEVPGIENVDVTEYIEGHSSYLWATQDILEQLDLDTYFPVFRNAPLSPSRRPGASKGEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36210			Protein of unknown function (D...		Lus10041814 [exp]	0	1
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10000116 [exp]	9.9	0.6595
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	20.0	0.6493
AT5G42140			Regulator of chromosome conden...		Lus10042800 [exp]	24.6	0.6520
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	31.1	0.5455
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10039971 [exp]	41.4	0.6246
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	45.1	0.6183
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10021248 [exp]	47.3	0.6098
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	54.1	0.6268
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	68.0	0.5653
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10019471 [exp]	72.7	0.6029

Compare expression of checked genes

Lus10041814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.