Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 440 / 3e-154 Pectin lyase-like superfamily protein (.1) AT5G47500 306 / 4e-102 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 298 / 2e-98 Pectin lyase-like superfamily protein (.1) AT2G36700 276 / 8e-91 Pectin lyase-like superfamily protein (.1) AT1G05310 275 / 1e-89 Pectin lyase-like superfamily protein (.1) AT5G55590 266 / 3e-86 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT3G29090 262 / 2e-85 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT2G21610 262 / 5e-85 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07430 262 / 6e-85 Pectin lyase-like superfamily protein (.1) AT5G07410 258 / 2e-83 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028364 [exp] 625 / 0 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 432 / 3e-151 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 426 / 8e-149 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 422 / 1e-147 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 328 / 9e-111 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 296 / 5e-98 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 285 / 6e-93 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 285 / 6e-93 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10016605 [exp] 268 / 7e-87 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015700 [exp] 551 / 0 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 452 / 4e-159 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 326 / 2e-109 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 303 / 9e-101 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 292 / 9e-96 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 284 / 5e-93 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 272 / 1e-88 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 272 / 1e-88 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 272 / 1e-88 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114900 [exp] 272 / 1e-88 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10041815 pacid=23146889 polypeptide=Lus10041815 locus=Lus10041815.g ID=Lus10041815.BGIv1.0 annot-version=v1.0 ATGCTAATGATGATGCGGCTGAAGCTACTTCTGTTGATGTTATTGCTGGTTGATCCAATTGGGTCAGAGGAATTATCATCCCCTGAAGACAGGAACACGC TGGCTATTGCTGAACCATCAGACGGCGGCTACTCCACGTGGCTGAAGAGCATGGCATCGTCCTTAAACAAGCATGCTCTGTTTCAGAAACCCATGAACAA GGTGAGGCCTTGCTTGACTTTGAAAGTGAAGAAGAAGAAGAAACACTCACGAACGTCGAGAAGCAGAGTATTCCCGACTCTGCGTAAGGCCATAGAGTCC ATCCCTGTAGTGAATGACTGCCGAGTTGTCATCTCCATTGGCAAAGGAACTTACAGGGAGAAGGTTGAGATACCGACAACAATGGCGTACATAACCTTGA AAGGAGCTGGTACTGGGAAGACCATCATAGAGTGGGATGATACAGCTGACAGAATTGGGGCCAATGGGCATCCTCTGGGAACTTTTGGTTCTGCAACTTT TGCTGTCAATTCTCCTTACTTCATTGCCGAGAACATCACCTTCAAGAACAATGCGCCTCCGCCACCGTCAGGGGCACTAGGGAAGCAAGCGGTGGCGCTA AGGATATCAGGAGACAACGCGGCGTTCATAGGCTGCAAGTTCATCGGAGCACAGGACACTCTGTACGACCACCTAGGGAGGCACTACTTCAAGCACTGCT ACATCGAAGGATCGGTAGACTTCGTATTCGGGAACGGCCTGTCTCTGTACGAGAACTGCCACTTGCACGCCATAACCAACACCTTCGGAGCTCTGACGGC GCAGAAGAGGGAGAGCCTGCTGGAGGAAACAGGGTTCTCATTCGTGAAATGCAAAGTGACTGGCTCCGGAGCTCTGTACCTCGGAAGGGCATGGGGGTCT TTTTCCAGAGTAGTGTTCGCTTACACTTTCATGGATAAGATTATCACTCCGCAAGGGTGGTACGACTGGGGAGATAAAAACAGAGAAATGACTGTGTTTT ACGGGCAGTATAAATGTTGGGGTCCAGGAGCTAATTTTGGAGGAAGGGTTCCGTGGTCCAGGGAGCTTACTGATGCTGAGGCTGAGCCTTTTGTTTCACT TGGTTTCATTGATGGCCATGAGTGGCTCCATGATTTGTTATGA
AA sequence Show only first row Show all	>Lus10041815 pacid=23146889 polypeptide=Lus10041815 locus=Lus10041815.g ID=Lus10041815.BGIv1.0 annot-version=v1.0 MLMMMRLKLLLLMLLLVDPIGSEELSSPEDRNTLAIAEPSDGGYSTWLKSMASSLNKHALFQKPMNKVRPCLTLKVKKKKKHSRTSRSRVFPTLRKAIES IPVVNDCRVVISIGKGTYREKVEIPTTMAYITLKGAGTGKTIIEWDDTADRIGANGHPLGTFGSATFAVNSPYFIAENITFKNNAPPPPSGALGKQAVAL RISGDNAAFIGCKFIGAQDTLYDHLGRHYFKHCYIEGSVDFVFGNGLSLYENCHLHAITNTFGALTAQKRESLLEETGFSFVKCKVTGSGALYLGRAWGS FSRVVFAYTFMDKIITPQGWYDWGDKNREMTVFYGQYKCWGPGANFGGRVPWSRELTDAEAEPFVSLGFIDGHEWLHDLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	1.7	0.9307
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	4.5	0.9238
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	5.7	0.9162
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10016208 [exp]	5.9	0.9004
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	6.7	0.9195
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	7.0	0.8404
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	7.7	0.9145
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	9.5	0.8657
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	9.7	0.8829
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	10.8	0.8969

Compare expression of checked genes

Lus10041815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.