Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51140 327 / 4e-112 Protein of unknown function (DUF3353) (.1) AT5G23040 157 / 7e-46 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT2G20920 45 / 3e-05 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038965 [exp] 145 / 2e-41 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10000868 [exp] 143 / 2e-40 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 132 / 7e-37 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10027257 [exp] 133 / 4e-34 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015600 [exp] 391 / 3e-137 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1) Potri.012G057700 [exp] 154 / 1e-44 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.004G177300 [exp] 50 / 1e-06 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.009G137600 [exp] 46 / 1e-05 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10041816 pacid=23146689 polypeptide=Lus10041816 locus=Lus10041816.g ID=Lus10041816.BGIv1.0 annot-version=v1.0 ATGTACGAGGATTACAAACGCTATCAGTCTATCGTCTTCAACCGAAGTCCAAACTTCAGCCATTTCCATCCCCCTGGCCCTCAGAATCATTCCGAAGGGT TTAGCGTTTCTCCTCCATCTTCAAGACTCCGCCTCCGCCTTTCCGCCGCCGAAATCCTGTATCTCTGGCAGAGGCTCGGTGTAGAGATGAGTATGTCTGG ACTGGCTCTTACTCCCACGAAGTGCGGTCCCCGGACGCCTGTAATTGGCTTGACGTGTTCAAGCCGTCGAGCTTCTCACTTTTCCTGTGTCGATAGAACT CGAGAACAGAAGATTGGATTGCCCCCGGTGCGAAGAAGTTGGGATGCATTGGTGCAAAGATGCAATCTGCGGCGAACTTACATAGTCAAAAGCGCTATGG ATGCTTCCTATGGTGGAGATAGGACGGATAAAGAATCTGCTGTTTTCCCCAGAATCCATGTAAGGGACCCATACAAACGACTTGGGATAAGCAGGGAGGC CTCTGAAGACGAAGTTCAGAGTGCAAGGAACTTCCTGATTCAGAGATATGGTGGACACAAACCAAGTGTGGATGCAATTGAATCAGCTCTTGATAAGATA ATCATGGAGAAGTATCATGAACGGAAGAACCCAAAAATTGACCTCAACAAAAAGGTCAGGGAAGTAAAGCAATCCCGGTTTGTGCAGGCTGTGACAAACA GATTCCGTACTCCATCCACAATGGTTGTTGCTAAAACAGCAATTGCATTTCTCATACTTGGAGCTCTCACCGTTCTGTTTCCAACCGAGGAAGGTCCAAC CCTTCAAGTAGCAATCTCTCTTGCTGCTACTATGTATTTCATATATGACAGATTGAAGAGCAAGCTCAGAGCTGTGCTTTATGGGGCTGCAGCTTTCATT TTCTCATGGCTGATCGGAACCTTCTTGATGGTTTCCGTGATTCCTCCGTTGCCGATAGTCAGAGGGCCGAGGAGCTTTGAAGTGACGACATCACTGCTAA CTTATGTGCTACTATGGGTTTCCTCCACCTATCTGAAGTAA
AA sequence Show only first row Show all	>Lus10041816 pacid=23146689 polypeptide=Lus10041816 locus=Lus10041816.g ID=Lus10041816.BGIv1.0 annot-version=v1.0 MYEDYKRYQSIVFNRSPNFSHFHPPGPQNHSEGFSVSPPSSRLRLRLSAAEILYLWQRLGVEMSMSGLALTPTKCGPRTPVIGLTCSSRRASHFSCVDRT REQKIGLPPVRRSWDALVQRCNLRRTYIVKSAMDASYGGDRTDKESAVFPRIHVRDPYKRLGISREASEDEVQSARNFLIQRYGGHKPSVDAIESALDKI IMEKYHERKNPKIDLNKKVREVKQSRFVQAVTNRFRTPSTMVVAKTAIAFLILGALTVLFPTEEGPTLQVAISLAATMYFIYDRLKSKLRAVLYGAAAFI FSWLIGTFLMVSVIPPLPIVRGPRSFEVTTSLLTYVLLWVSSTYLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	0	1
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	1.4	0.9280
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	2.4	0.9165
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	2.6	0.8919
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	3.0	0.9139
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	3.5	0.9127
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	4.0	0.8846
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	4.5	0.9118
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	5.5	0.8985
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	8.5	0.8778
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	8.7	0.8639

Compare expression of checked genes

Lus10041816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.