Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36195 316 / 4e-105 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 304 / 3e-100 Serine carboxypeptidase S28 family protein (.1) AT2G18080 299 / 2e-98 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT5G65760 60 / 8e-10 Serine carboxypeptidase S28 family protein (.1) AT2G24280 57 / 5e-09 alpha/beta-Hydrolases superfamily protein (.1) AT5G22860 50 / 1e-06 Serine carboxypeptidase S28 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028365 [exp] 455 / 8e-159 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10011603 [exp] 71 / 2e-13 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10021325 [exp] 63 / 1e-10 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10005353 [exp] 61 / 6e-10 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10017002 [exp] 56 / 1e-08 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10008358 [exp] 56 / 2e-08 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 53 / 2e-07 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 51 / 8e-07 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015400 [exp] 347 / 3e-117 AT4G36195 704 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Potri.007G015300 [exp] 319 / 4e-106 AT4G36195 701 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Potri.010G232300 [exp] 70 / 5e-13 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.007G008100 [exp] 62 / 2e-10 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G018500 [exp] 62 / 2e-10 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.006G207900 [exp] 61 / 3e-10 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G213000 [exp] 57 / 4e-09 AT5G22860 371 / 6e-126 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 57 / 5e-09 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 57 / 1e-08 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 53 / 2e-07 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10041817 pacid=23146814 polypeptide=Lus10041817 locus=Lus10041817.g ID=Lus10041817.BGIv1.0 annot-version=v1.0 ATGAAGTCGCTCCTGTTGGTTGCGTCTCTGTTGTATTTTATGCTTTCAACGCTGTCTTATGGCTTTCTCGAATCTCGTGCTTTGATTAACCGCCCTCGCC TCACTGGAATCGCTGCCTCCAAGTACTTAACTACTAATGAATTGTGGTTCAGTCAGACGCTCGATCATTTCTCCCCATTTGATCACCGGAGGTTCCAGCA GCGCTACTATGAGTTTTTGGACCACTTCAGAGCTCCCAATGGACCCATCTTTCTGACAATTTGTGGGGAAGGTCCTTGCAGTGGCATACAAAATGACTAT CTTGGCGTAAGTCGTATTCTTTCCTTCAATAACTTACTAACTGATCCAGGGAGTTCTGGTTCGGATTTAGGAGACTCGCTGAATGTGAAACTTAACAGAA CAGGAGTGGAAAATCCATGGTTTTTCTTTGGTGTTTCGTATTCCGGGGCTCTTAGTGCATGGTTTCGTCTGAAGTTCCCGCACTTAACATGCGGGAGTCT TGCTAGTTCGGCAGTTGTTCTTGCTGTTTATAACTATACAGAGTTTGACCAGCAGATTGGTGTGTCAGCTGGTCCTGAATGTAAAGCAGCCCTTCAGGAT GTTACAAAGCTTGTTGATCAAGGTCTTGCATCAAACACAGAATCTGTGAAGTCACTGTTTGGTGCAACCGAGCTTAACATTGATGGTGATTTCCTGTATT TTCTAGCGGATGCTGCAGTTATTGGGTTTCAGTATGGGAATCCAGATGTATTATGTGATCCGCTTGTTCAAGCTAAGAAGGGTGGAGACGATCTGTTGAA GGTATGCAGAATGTACCTAGTGCTACCACCAGACTTCCCTTGTCCCTGTTTTGGTCTCAGCATTGTCGATTTCCATATTTCAGGGAATGCAGAGAATTGC ACATCGCCTGACGCGGTGCAGAAAGTAAGGCAAAAGATCATTGAACACATGGACTTGTGGTTGTCCGAGTGTGTCTCTAGTGGTAGGGGCTACATGGCAA TGTAA
AA sequence Show only first row Show all	>Lus10041817 pacid=23146814 polypeptide=Lus10041817 locus=Lus10041817.g ID=Lus10041817.BGIv1.0 annot-version=v1.0 MKSLLLVASLLYFMLSTLSYGFLESRALINRPRLTGIAASKYLTTNELWFSQTLDHFSPFDHRRFQQRYYEFLDHFRAPNGPIFLTICGEGPCSGIQNDY LGVSRILSFNNLLTDPGSSGSDLGDSLNVKLNRTGVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASSAVVLAVYNYTEFDQQIGVSAGPECKAALQD VTKLVDQGLASNTESVKSLFGATELNIDGDFLYFLADAAVIGFQYGNPDVLCDPLVQAKKGGDDLLKVCRMYLVLPPDFPCPCFGLSIVDFHISGNAENC TSPDAVQKVRQKIIEHMDLWLSECVSSGRGYMAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	0	1
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10025467 [exp]	1.4	0.8665
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	1.7	0.8852
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10007232 [exp]	4.1	0.8174
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	5.5	0.8461
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	7.1	0.8631
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	8.0	0.8577
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	8.5	0.8355
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	9.5	0.8370
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	9.9	0.8353
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	10.2	0.7881

Compare expression of checked genes

Lus10041817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.