Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 144 / 9e-39 F-box/RNI-like superfamily protein (.1) AT5G56390 71 / 4e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G26340 68 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56420 66 / 1e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G03220 62 / 4e-10 Protein with RNI-like/FBD-like domains (.1) AT5G02930 61 / 5e-10 F-box/RNI-like superfamily protein (.1) AT5G38390 61 / 6e-10 F-box/RNI-like superfamily protein (.1) AT3G03030 61 / 8e-10 F-box/RNI-like superfamily protein (.1) AT5G02700 61 / 8e-10 F-box/RNI-like superfamily protein (.1) AT3G28410 59 / 2e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028366 [exp] 441 / 7e-156 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10028369 [exp] 389 / 1e-135 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 332 / 3e-110 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 316 / 2e-104 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 223 / 1e-72 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 228 / 5e-72 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10035151 [exp] 206 / 9e-61 AT5G51170 306 / 7e-101 unknown protein Lus10034414 [exp] 164 / 6e-46 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10010381 [exp] 153 / 4e-45 AT2G04230 47 / 9e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 169 / 6e-48 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 162 / 2e-45 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 157 / 3e-43 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 145 / 5e-39 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 126 / 5e-32 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 65 / 4e-11 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024200 [exp] 63 / 2e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 61 / 6e-10 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 54 / 1e-07 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024600 [exp] 54 / 2e-07 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10041818 pacid=23146680 polypeptide=Lus10041818 locus=Lus10041818.g ID=Lus10041818.BGIv1.0 annot-version=v1.0 ATGAAGCGGCTTCGAGACTCCGCCGACGTGATAGAGCAAATCCTGATGTACTTACCCATAAGGGATGCTGCCAGAACCAGCATCTTATCAAAAGACTGGC GGTATCGTTGGAGAAGCATTCCTCAACTCGTGTTCGATGCGAATTTCGCAGCTACATTCCACAACGATCACTTGCTGGACAAGAAAAAGGTCATGCTTAG CATTTACAGAGCTCTGATAGCACATGATGGCCCCATAACCAAGTTCAAGCTCGACATTCCTGGATTGAACCCATCTCCTCAGATTGACCTGTTGATGCCT TACCTCACAAGCAAACAAGTCCAAGAGCTAACCCTTCTCGTTGACACCGACGATGACTACGCCAAACTGCGTGCCCCTTTGTTCTCAGCCATCAACTTGA GGCGTCTGAAATTGCAACGTTGCGAGTTCACTGTGCCATCTTCCTTTGTCGGGTTTAGTAAGCTTACTTTCCTTGAATTGAAAGACGTAATAACACCTGA CGATTTCTTCGAGCATTTCCTTCCGATGTTTCCGGTGCTAGAAGAGTTGAGGGTTGCTGATTGTGAAGAGATAGAGCCTGTATTCGTATCGCCTTCCCTC AAAACGCTTCTTTTCGAATCCTGCATTTGGAGAATCTTCTTCAAGCATACCCCGCTTCTCTCCGTACTATCTGTCATGGATCGTTGTGGAAAATCTTATG CGGAGACCATTCATGAAGGTAGCAATCCGGATATGGTGGCTCTTTTTGCTTCTCTTCCTGCTCTACAGGAGCTGAATCTTGGCACTGAAATGCTGCTATT CCTTGCTGCTGACAGTCATATCCCACGCCAGCTTCCTACAACCCTCCACCACTTGAAAGTCATCAAAATACCTCATCTATTCCTTGACAGCTCATCACAG GCGCAGCTTTTTATCTGTCTGATCAGGAGTTCCCCTAACTTGCAGCAACTCACAATTGGGGTTGACGATTATGATGAAGATTATCGGGATTACGAGGTGA TCGCTAGTCTGCACGAGCTGTTGGAACCAGAGAACAGTTGCGGAGTTTGCTGTATTGAACGCCTTGAAGAGCTTAACATTCACGATAGCCGCGGGACAAA AGTGGAGATGGAGCTGGTGAGGTTTGTACTAGCCAATGCTCCACTGCTGGTTAGGGTCTTCATTCAGCCTGCAGGACAACTGAACTCTACAAAGAGACTG GAATTCTTGAAAGATGTGATGCTTTGTAAGCGTATGTCCGAAAAGGCGGAGGTCAAATTGACTTGA
AA sequence Show only first row Show all	>Lus10041818 pacid=23146680 polypeptide=Lus10041818 locus=Lus10041818.g ID=Lus10041818.BGIv1.0 annot-version=v1.0 MKRLRDSADVIEQILMYLPIRDAARTSILSKDWRYRWRSIPQLVFDANFAATFHNDHLLDKKKVMLSIYRALIAHDGPITKFKLDIPGLNPSPQIDLLMP YLTSKQVQELTLLVDTDDDYAKLRAPLFSAINLRRLKLQRCEFTVPSSFVGFSKLTFLELKDVITPDDFFEHFLPMFPVLEELRVADCEEIEPVFVSPSL KTLLFESCIWRIFFKHTPLLSVLSVMDRCGKSYAETIHEGSNPDMVALFASLPALQELNLGTEMLLFLAADSHIPRQLPTTLHHLKVIKIPHLFLDSSSQ AQLFICLIRSSPNLQQLTIGVDDYDEDYRDYEVIASLHELLEPENSCGVCCIERLEELNIHDSRGTKVEMELVRFVLANAPLLVRVFIQPAGQLNSTKRL EFLKDVMLCKRMSEKAEVKLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10041818 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	2.8	0.8148
AT4G22390			F-box associated ubiquitinatio...		Lus10030826 [exp]	3.0	0.7959
					Lus10001030 [exp]	8.0	0.7665
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	10.0	0.7544
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	16.2	0.8042
AT2G44210			Protein of Unknown Function (D...		Lus10007458 [exp]	19.4	0.6395
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	23.3	0.7955
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	25.9	0.7452
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	26.8	0.7769
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	30.3	0.7862

Compare expression of checked genes

Lus10041818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.