Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16530 284 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT1G72590 253 / 2e-82 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 44 / 8e-05 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 41 / 0.0007 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028371 [exp] 535 / 0 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10042055 [exp] 268 / 1e-88 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10018059 [exp] 142 / 3e-41 AT1G72590 190 / 4e-60 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 44 / 3e-05 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 43 / 0.0002 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163600 [exp] 316 / 5e-107 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.009G125200 [exp] 296 / 1e-98 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.010G245200 [exp] 47 / 9e-06 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 44 / 9e-05 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 43 / 0.0002 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 42 / 0.0002 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 42 / 0.0002 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 41 / 0.0006 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 41 / 0.0006 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041820 pacid=23146937 polypeptide=Lus10041820 locus=Lus10041820.g ID=Lus10041820.BGIv1.0 annot-version=v1.0 ATGGTGGCGATACGGCTCGATCGGCTGCTCGGAGCTGCGTGGGTCGTCGGTACCTTGCCGATACTGGTCGCTTCACTGCCCATCTCTAAACTGAACGCTC TCCACCAACTCTTACTAGGTTTCGCTAAAAGAGGCAAAATCATGAAATCGTCTTCTAATAAGTTCACAGTGCCACAGAGGTTTTTCCTGCATTTCTACGC CTTAGGCTTGGTCTCGACTACTTTTTTACTGGTGATTACTTGGAACTACGCCGCCCAAACAGCGCCGCTTGTCCATGATCCGCTGGACTTCTCGACGGCG GCTTCTCACTTGATCGGCGGCGGCGGTGGCGGCTCCCGGTTGTTATCTTTGCACAAGACGCATTCCCGGACGGCGAAGCACAGATATAAGGTATGGGTGT CGGTGTTTTTGCTGCTGTTGATGGAATCTCACGTCTCGAGGCGGCTTTACGAGACGATTTATGTGTTCAAGTACAGTACTTCAGCTCGCATGCATGTTCT TGGCTATCTAACTGGACTGTTTTTCTACGCTGCTGCTCCACTGTCACTCTGCCACTTTTGTGCTTTGGAGGCTCTGAATTTTGCAGCTGATGAAGTTGTG GAGCTGAATGCTAAAAGCAAACAGGGTGATCCTTCGTTTGTATTCGGTGATGGGACTGATTGGAGGGCGTTTGTGAAGCCTATATTGAAGCTGGGATGGT GCCAATGGGTTGGTGCTGCGGTTTTCTTTTTGGGATGGCTTCATCAGCTTAGATGTCATCGAATTTTGGGCTCATTGAGAGGGAATCGGAGAGAACAAAC CAATGACTATGCAATTCCTCGTGGGGATTGGTTTGAATTGGTTTCGAGCCCACATTACTTAGCTGAGATGCAGCAGAGACACAGAGGTGGTACTTACACA AGTTCGAGGAGTATCCTCGCAATCGACGATCATTTCTTCCGTTTATTTACTGATAGAATGAATAGTGATTTTGCTGTCCTAGTGCTCTTCCAGGTTCTGT GA
AA sequence Show only first row Show all	>Lus10041820 pacid=23146937 polypeptide=Lus10041820 locus=Lus10041820.g ID=Lus10041820.BGIv1.0 annot-version=v1.0 MVAIRLDRLLGAAWVVGTLPILVASLPISKLNALHQLLLGFAKRGKIMKSSSNKFTVPQRFFLHFYALGLVSTTFLLVITWNYAAQTAPLVHDPLDFSTA ASHLIGGGGGGSRLLSLHKTHSRTAKHRYKVWVSVFLLLLMESHVSRRLYETIYVFKYSTSARMHVLGYLTGLFFYAAAPLSLCHFCALEALNFAADEVV ELNAKSKQGDPSFVFGDGTDWRAFVKPILKLGWCQWVGAAVFFLGWLHQLRCHRILGSLRGNRREQTNDYAIPRGDWFELVSSPHYLAEMQQRHRGGTYT SSRSILAIDDHFFRLFTDRMNSDFAVLVLFQVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10041820 [exp]	0	1
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	1.0	0.8839
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	4.0	0.8506
AT2G46550			unknown protein		Lus10005973 [exp]	6.5	0.8419
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	8.2	0.8339
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	9.2	0.8278
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	12.4	0.8302
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	14.0	0.7757
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	15.3	0.8111
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	18.3	0.8261
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	20.4	0.8025

Compare expression of checked genes

Lus10041820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.