Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66280 677 / 0 GMD1 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) AT3G51160 670 / 0 GMD2, MUR_1, MUR1 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47650 65 / 2e-11 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 59 / 3e-09 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 56 / 2e-08 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT4G30440 54 / 6e-08 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT2G28760 53 / 1e-07 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 50 / 8e-07 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 49 / 4e-06 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT4G00110 47 / 1e-05 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028373 [exp] 553 / 0 AT5G66280 519 / 0.0 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) Lus10030368 [exp] 67 / 4e-12 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 64 / 6e-11 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 61 / 7e-10 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 59 / 3e-09 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10020776 [exp] 55 / 7e-08 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10037499 [exp] 53 / 2e-07 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10025293 [exp] 53 / 2e-07 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10019967 [exp] 52 / 4e-07 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116200 [exp] 686 / 0 AT3G51160 661 / 0.0 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G013900 [exp] 686 / 0 AT3G51160 670 / 0.0 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G204400 [exp] 66 / 1e-11 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 65 / 3e-11 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 60 / 9e-10 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 55 / 3e-08 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.001G320000 [exp] 53 / 2e-07 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 52 / 3e-07 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.006G178500 [exp] 51 / 7e-07 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.001G237200 [exp] 50 / 1e-06 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10041823 pacid=23146670 polypeptide=Lus10041823 locus=Lus10041823.g ID=Lus10041823.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTGACAATGACAATTCCAGATCCGGATCCGCCAACGGCGACGCATCTCCGCCGGTAATAAAGATCGCTCTGATCACCGGAATCACCGGCC AGGACGGCTCCTACCTCACCGAGTTCCTCCTCGACAAGGGCTACGAGGTCCACGGCCTCATCCGGAGGTCCTCCAACTTCAACACCCAGCGACTCAACCA CATCTACATCGATCCCCACAACATCAACAAGGCTCGGATGAAGCTCCATTACGCCGATCTCAGCGACGCTTCCTCCCTCCGCCGCTGGCTCGACACCATC CGCCCTGACGAGGTTTACAACCTCGCCGCCCAGTCACACGTGGCCGTCTCCTTTGAGATCCCCGACTACACCGCTGACGTTGTGGCCACGGGAGCCCTCC GCCTCCTCGAGGCGGTCAGATCTCATATCCTGGACACCGGCCGCGCTCACATCCGGTACTACCAGGCTGGATCGTCCGAGATGTTCGGATCCACTCCGCC TCCTCAATCGGAGACCACTCCGTTCCACCCTAGATCCCCTTACGCTGCATCCAAATGTGCTGCGCATTGGTACACTGTCAATTACAGGGAAGCGTACGGT CTGTACGCCTGCAACGGGATCTTGTTCAACCACGAATCTCCGAGGAGAGGGGAGAATTTCGTGACGAGGAAGATCACGAGAGCCGTGGGGAGGATCAAGG TCGGACTGCAGACGAAAGTGTACTTGGGGAATCTGCAGGCGTCGAGGGATTGGGGCTTCGCTGGAGACTATGTTGAGGCGATGTGGATGATGTTACAGCA GGAGAAGCCCGACGACTACGTGGTGGCTACTGAGGAATCGCACAGCGTTCAAGAGTTTCTGGAGTTGGCGTTTGGATCAGTGGGGCTGAACTGGAAGGAT CACGTTGAGATCGACAAGAAGTATTTCAGGCCGGCGGAAGTTGATAACCTGAAGGGTGACGCCAGAAAAGCCAAGACGGTGTTGGGATGGAAGCCCAAAG TTGGATTCGAGAAGCTGGTGAAGATGATGGTGGATGAAGACATTGAGTTGGCCAAAAGGGAGAAAGTGCTGGTTGATGCTGGTTACATGGATGCCCAGCA GCAGCCTTGA
AA sequence Show only first row Show all	>Lus10041823 pacid=23146670 polypeptide=Lus10041823 locus=Lus10041823.g ID=Lus10041823.BGIv1.0 annot-version=v1.0 MAATDNDNSRSGSANGDASPPVIKIALITGITGQDGSYLTEFLLDKGYEVHGLIRRSSNFNTQRLNHIYIDPHNINKARMKLHYADLSDASSLRRWLDTI RPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHILDTGRAHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYG LYACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQTKVYLGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHSVQEFLELAFGSVGLNWKD HVEIDKKYFRPAEVDNLKGDARKAKTVLGWKPKVGFEKLVKMMVDEDIELAKREKVLVDAGYMDAQQQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	2.2	0.8383
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10040447 [exp]	2.6	0.8564
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10013371 [exp]	4.5	0.8148
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	4.9	0.8443
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	8.5	0.8284
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	8.7	0.8203
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	10.8	0.8044
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	12.7	0.8317
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	16.3	0.8433
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	17.3	0.8243

Compare expression of checked genes

Lus10041823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.