Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35260 599 / 0 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 590 / 0 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 582 / 0 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT5G03290 312 / 2e-104 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 299 / 3e-99 IDH-VI isocitrate dehydrogenase VI (.1) AT1G32480 280 / 3e-94 IDH-IV isocitrate dehydrogenase IV (.1) AT1G80560 105 / 5e-25 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14200 102 / 3e-24 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G31180 98 / 2e-22 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028374 [exp] 667 / 0 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 570 / 0 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 504 / 0 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10002221 [exp] 310 / 2e-103 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 309 / 3e-103 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 309 / 3e-103 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 307 / 2e-102 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10030344 [exp] 103 / 4e-24 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 92 / 3e-20 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064000 [exp] 615 / 0 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 614 / 0 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 603 / 0 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 600 / 0 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.006G126700 [exp] 310 / 2e-103 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 308 / 7e-103 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.001G185600 [exp] 109 / 2e-26 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041824 pacid=23147052 polypeptide=Lus10041824 locus=Lus10041824.g ID=Lus10041824.BGIv1.0 annot-version=v1.0 ATGGCTAAGAGATCCGTTCCTCTCCTAAAGCAACTCCTCTCCTCATCCACCTCCTCTCTCCGCGAGTCATGCTCCTCTCGCCTCACCTCTCAACGATCCG TCACCTACATGCCCCGTCCCGGCGACGGTACTCCACGCGCTGTCACTTTGATTCCCGGTGATGGAATTGGACCTCTCGTCACCGGCGCCGTCGAGCAAGT CATGGAGGCGATGCACGCTCCTGTCTACTTCGAGCGCTACGAAGTCCACGGGGACATGAAGAAGGTGCCGCAAGAGGTCCTCGATTCGATTAAGAAGAAC AAGGTCTGCTTGAAAGGAGGACTCGCCACTCCCATGGGAGGAGGTGTTAGTTCTTTGAACGTGCAGCTGAGGAAGGAGCTTGATTTGTACGCTTCACTGG TGAATTGCTTCAATCTTCCTGGATTGCCAACTCGCCACGAGAATGTTGACATCGTCGTGATTAGAGAGAATACAGAGGGTGAGTACGCCGGCCTGGAGCA CGAGGTCGTCCCCGGTGTGGTTGAGAGCCTGAAGGTGATTACGAAGTTCTGCTCAGAGAGGATTGCCAAGTACGCTTTCGAGTATGCTTACCTGAACAAC AGGAAGAAAGTGACTGCTGTCCACAAGGCAAACATCATGAAGCTTGCTGATGGCTTGTTCTTGGAGTCTTGCCGAGAGGTTGCTACCAAATATCCTGGTA TTAAATACAACGAAATCATCGTGGACAATTGCTGTATGCAACTTGTTTCCAAGCCTGAGCAGTTTGACGTCATGGTCACACCTAATCTTTATGGAAATCT AGTTGCAAATACAGCTGCAGGTATTGCTGGTGGCACTGGAGTCATGCCTGGAGGTAATGTGGGAGCTGAGCATGCAGTGTTCGAGCAAGGTGCTTCGGCA GGAAATGTGGGGAATGACAAACTATCGGAGCAGAAGAAGGCGAACCCAGTAGCTCTGCTGCTCTCATCAGCCATGATGCTAAGGCATCTTCAGTTCCCAT CGTTCGCCGATAGATTGGAGACTGCTGTGGTAGGAGTGATTTCAGAGGGCAAGACCAGGACCAAAGATTTGGGAGGCACTAGTACCACCCAAGAGGTCGT TGATGCCGTCATAGCGGCTTTGAAGAACTGA
AA sequence Show only first row Show all	>Lus10041824 pacid=23147052 polypeptide=Lus10041824 locus=Lus10041824.g ID=Lus10041824.BGIv1.0 annot-version=v1.0 MAKRSVPLLKQLLSSSTSSLRESCSSRLTSQRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGDMKKVPQEVLDSIKKN KVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNN RKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASA GNVGNDKLSEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVVGVISEGKTRTKDLGGTSTTQEVVDAVIAALKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	0	1
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10038256 [exp]	2.0	0.8327
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	3.7	0.8839
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	7.7	0.7607
AT1G77700			Pathogenesis-related thaumatin...		Lus10025629 [exp]	10.0	0.8232
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	11.0	0.8459
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	14.9	0.8080
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	15.7	0.7772
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	17.1	0.8315
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	17.5	0.7702
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	19.3	0.8169

Compare expression of checked genes

Lus10041824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.