Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17650 178 / 6e-54 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 152 / 4e-45 AAE1 acyl activating enzyme 1 (.1.2) AT5G16370 121 / 4e-33 AAE5 acyl activating enzyme 5 (.1) AT5G16340 121 / 5e-33 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 120 / 1e-32 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 120 / 2e-32 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G65890 119 / 2e-32 AAE12 acyl activating enzyme 12 (.1) AT1G76290 118 / 5e-32 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 117 / 2e-31 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 108 / 1e-28 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016011 [exp] 155 / 1e-45 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10012266 [exp] 147 / 6e-43 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10031367 [exp] 130 / 1e-36 AT1G65890 548 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 130 / 3e-36 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 130 / 4e-36 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10007369 [exp] 129 / 2e-35 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10039161 [exp] 121 / 8e-33 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10013772 [exp] 115 / 3e-32 AT5G16340 340 / 9e-115 AMP-dependent synthetase and ligase family protein (.1) Lus10016869 [exp] 117 / 2e-31 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099500 [exp] 177 / 3e-53 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G250700 [exp] 155 / 2e-45 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.002G010600 [exp] 153 / 9e-45 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G102901 [exp] 137 / 4e-39 AT1G20560 608 / 0.0 acyl activating enzyme 1 (.1.2) Potri.007G059401 [exp] 136 / 1e-38 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.017G138451 [exp] 128 / 2e-35 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 128 / 2e-35 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 126 / 8e-35 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 125 / 2e-34 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 124 / 7e-34 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10041825 pacid=23146896 polypeptide=Lus10041825 locus=Lus10041825.g ID=Lus10041825.BGIv1.0 annot-version=v1.0 ATGCTGTTATCCAACGGGGACATCGGGTTCGAAATCGTTCGACCGAAAAGCAAATTCGATCCGATCAGCGTCAACTACACTTCAGGCACAACATCAAGAC CCAAGGGAGTCGTGTACAGCCACAGAGGAGCATATCTCAATTCCTTAGCTACACTTTTCCTCCATGAAATCAGCTCCACCCCTGTTTACCTATGGACGGT TCCTCTGTTCCATTGTAACGGGTGGTGCCTTCCCGGGGGGATTGCAGCTCAAGGAGGCACAAATATCTGCCTCAGAAAGGTCACTCCAAAGGCAATCTTT GACAACATAGAAATTCAATGTGACTCATTTGGGAGGCGCACCAACCGTGTTGAACATGATCACGAAATCTTGCATTCGCGACCAGAAGCCACTTCCTCAC AAAGTGAGAGTGGCTAA
AA sequence Show only first row Show all	>Lus10041825 pacid=23146896 polypeptide=Lus10041825 locus=Lus10041825.g ID=Lus10041825.BGIv1.0 annot-version=v1.0 MLLSNGDIGFEIVRPKSKFDPISVNYTSGTTSRPKGVVYSHRGAYLNSLATLFLHEISSTPVYLWTVPLFHCNGWCLPGGIAAQGGTNICLRKVTPKAIF DNIEIQCDSFGRRTNRVEHDHEILHSRPEATSSQSESG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	0	1
AT2G17650			AMP-dependent synthetase and l...		Lus10041826 [exp]	1.0	0.9942
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004919 [exp]	1.4	0.9794
AT1G60010			unknown protein		Lus10010708 [exp]	2.4	0.9528
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	4.0	0.9092
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	7.5	0.9150
AT5G53880			unknown protein		Lus10000796 [exp]	7.7	0.8925
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	9.2	0.9030
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	9.5	0.9027
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	9.9	0.9056
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	10.8	0.9208

Compare expression of checked genes

Lus10041825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.