Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51440 390 / 7e-135 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G51450 388 / 4e-134 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G51430 387 / 8e-134 SSL5, YLS2 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G51420 379 / 2e-130 ATSSL4 strictosidine synthase-like 4 (.1) AT5G22020 160 / 4e-45 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 157 / 3e-44 SSL3 strictosidine synthase-like 3 (.1) AT3G59530 144 / 4e-39 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57030 135 / 4e-36 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 134 / 1e-35 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41290 130 / 2e-34 SSL2 strictosidine synthase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028376 [exp] 640 / 0 AT3G51430 380 / 1e-131 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10013370 [exp] 162 / 4e-46 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10008451 [exp] 154 / 4e-43 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 148 / 3e-40 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 144 / 4e-39 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10009646 [exp] 134 / 6e-35 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10009014 [exp] 134 / 2e-34 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10006331 [exp] 127 / 3e-33 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10012095 [exp] 126 / 1e-32 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099400 [exp] 485 / 2e-169 AT3G51430 397 / 1e-134 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.006G140500 [exp] 184 / 1e-54 AT3G51430 170 / 2e-49 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 165 / 4e-47 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.006G040900 [exp] 150 / 2e-41 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.007G130700 [exp] 147 / 3e-40 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 146 / 8e-40 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.016G037900 [exp] 137 / 1e-36 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.016G037700 [exp] 135 / 8e-36 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.012G046200 [exp] 125 / 4e-33 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.008G109966 [exp] 126 / 9e-33 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10041827 pacid=23146671 polypeptide=Lus10041827 locus=Lus10041827.g ID=Lus10041827.BGIv1.0 annot-version=v1.0 ATGCCTCCGCCTCAGCCAACACCGCAGAGTCGCCGGACCTCCGCCAGCTGGCCGACTACCTCCCTCCTCATCGTGCTATTCACCCCGGTGCTATTAGCCG CCGTCGTCTACAAACTAGACTCTTACGACCCGATTCACCTCCCCCTCCACGAATTGACTCAGCCTCCCCTGAAAGCGCCATCCAAAAACAACAACATCCT CAAAAGCTTCGAGTTAGTAGGTCAGGGTCAGGTCAACGGACCCGAGGACATCGCCTACGACTCCGAGTCCGGAGTCATCTACACCGGGTGCGCGGACGGT TGGATCAAGCGAGTCACGGTCAATGACTCGGTCGGCGATATAACCGTGTCTAGTTGGGTCAACACCGGTGGCAGACCCCTCGGACTCGCCCTAGACCGAG TTAACCGCGATTTGATCGTAGCCGATGCTTTTAAGGGGCTACTGAGAGTGAGTAGCAGGGACGGAGGAATCGAGCTTCTGACGGACGAAGCAGAGGGAGT GAAATTCAAGTTGACGGACGCCGTAGCCATAGATGCAGAGGATGGATCTTTGTATTTCACGGATGCTTCTTACGAATACACCGTGGCTGATTCCGTAGTC GATATTTTGGGAGGGAAGCCCCATGGTCGTCTGCTGAGATATGATCCTGTGACTAAGCAGACTACAGTGATGCTGCGAGATCTCTACTTTGCTAATGGAA TAGAGATTTCGCCCGATCAACAATCCCTTGTCTTCTGTGAAACACCCATGAGAAGGTGTAGGAAATATTACATAAAAGGGGAGAAGAAGGGGAAACTGGA GAAATTTGCTGATAATCTGCCTGGATTGCCTGATAACATCCATTATGATGGCCATGGACATTACTGGATTGCATTCCCCGCGGGAATTACTGCCGAGTTA GAGTTTTCTTTGAAACACCCTCTACTGAGAAAGGCTATATTAATGTTCGAAAAGTACATAAAACCACTGCACATGGAGAAGAACAGCGGGGTTTTCATGG TGGATTTGGATGGGAAACCAGTTGCTCACTACAATGATGCTGAACTTCGCTTCATCACCACTGGATACAAGATCGGAAATCATTTGTATCTTGGCAACCT CATCCATGACAGCATCTTTCGCCTTGATCTCGCCAAGCATCCAGCATCATAG
AA sequence Show only first row Show all	>Lus10041827 pacid=23146671 polypeptide=Lus10041827 locus=Lus10041827.g ID=Lus10041827.BGIv1.0 annot-version=v1.0 MPPPQPTPQSRRTSASWPTTSLLIVLFTPVLLAAVVYKLDSYDPIHLPLHELTQPPLKAPSKNNNILKSFELVGQGQVNGPEDIAYDSESGVIYTGCADG WIKRVTVNDSVGDITVSSWVNTGGRPLGLALDRVNRDLIVADAFKGLLRVSSRDGGIELLTDEAEGVKFKLTDAVAIDAEDGSLYFTDASYEYTVADSVV DILGGKPHGRLLRYDPVTKQTTVMLRDLYFANGIEISPDQQSLVFCETPMRRCRKYYIKGEKKGKLEKFADNLPGLPDNIHYDGHGHYWIAFPAGITAEL EFSLKHPLLRKAILMFEKYIKPLHMEKNSGVFMVDLDGKPVAHYNDAELRFITTGYKIGNHLYLGNLIHDSIFRLDLAKHPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	1.4	0.9709
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	2.4	0.9677
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	2.8	0.9633
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	3.2	0.9708
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	3.5	0.9640
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	3.9	0.9673
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	5.7	0.9677
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	6.0	0.9631
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	6.9	0.9583
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	7.5	0.9634

Compare expression of checked genes

Lus10041827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.