Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17670 548 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62680 200 / 1e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 187 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 188 / 5e-52 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 185 / 6e-51 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 183 / 2e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09900 180 / 5e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63080 180 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 179 / 2e-49 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62720 176 / 3e-49 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028379 [exp] 870 / 0 AT2G17670 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009201 [exp] 178 / 9e-52 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 181 / 1e-49 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 179 / 7e-49 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 180 / 8e-49 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 179 / 1e-48 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 179 / 3e-48 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 179 / 3e-48 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 176 / 8e-48 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103300 [exp] 616 / 0 AT2G17670 528 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G242200 [exp] 211 / 1e-61 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 211 / 2e-61 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 210 / 8e-61 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 207 / 8e-60 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 200 / 2e-57 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 199 / 5e-57 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 198 / 9e-57 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 196 / 9e-56 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 196 / 2e-55 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041832 pacid=23146913 polypeptide=Lus10041832 locus=Lus10041832.g ID=Lus10041832.BGIv1.0 annot-version=v1.0 ATGCGAAAGGTTTATGATCAGAACGCAACGCCGGGAAAGAGGGAAAAAGGTTGCCGGAGAAAAGACAGAATGGGGAAAATCCCGCTATCGTTTCGTTCAG CAGTACCATCATCATCAGCACTGATCAAAAGTGCTCACGAATCTCAATCTATCTCCGACCAGCCTCGTCAATTTCTCAAGAAAGCCATCAAACGGAAGCC TACCAGGCCTTCAGCAGAACAAGATTCTGCTCGACGGCAGCACCATAAACCCTTGGTGAACTCACCGGACCTCAATGAAGCCAAACGCCTCTTCAATTCC CTCGTCGCGACCGCCCGCGCCCCGCTGGAGCTCCGATTCAACAACGCATTTCTGCAATCCTACGCCTCCATCTCCACTCCCGACAAGTCAATCGCACTTC TCCAGCACATGTCCAAAACCCTAGCTTCCTTCTCCCCTGACCGCTCCACGTTCCACATCTTACTTCCGCACGGTTCCGCCTCTCCAGACTCCTCCCTCGC TCTCGCCACCGTTCGCCAGATGCTCAATCTAATGGTCAACAGAGGCTTCAGCCCTAATCAGGTCACCGTCGACATTGCTATCCGGTCACTCTGCTCAGCC GGACACGTCGACGAGGCAATCGAGTTGGTAAAGGAACTTTCGTCGAAGGATTGTAAGCCTGATTCTCACACCTACAATTTTATCATCAAGTCCCTTTGCA AGACCAGGGCTTTGAGCACGGTATATGCATTTATTAAAGAATTCAGCAATTCTTTTGGGGTGGAGCCTGATGTTGTTTCTTTGACTATATTGATTGATAA CGTTTGTAATTCCAAGAATCTGAGGGAGGCTACCATGTTGGTAGGTGTTATGGAAGCATTTGGGCATAAGCCCGACTGTTTTGTGTACAATACCATTATG AAAGGTTACTGTGTGTTGAGTAAAGGGAGTGAGGCTATTGGGCTCTATAATCAAATGAAGGAGGAAGGTGTGGAGCCTGATATGATCACTTATAATACCT TGATTTTCGGGCTGTCGAAATCTGGGAGAGTGAGTGAAGCTACGAAGTATTTGAAAGTCATGGTGGAAGCAGGTTATCTTCCTGATACTATTACCTACAC ATCATTGATGAATGGTTTATGCAGAGAAAGGAATGTAATGGGTGCAATGAAATTGTTAGAGGATATGAAGGAAAACGGTTGTGCTCCAAATGCGCGGACG TACAATACTTTGCTGCACGGGTTATGCAAGGGGAGAATGTTGGAGAAGGGAATCAAATTGTACGGGATGATGAAAGAGGTCGGCATGCAGCTTGATAATG CTTCTTATTCCACGTTTGTGAGGGCACTTTGTAAGGAAGGTAAAGTTGCAGAGGCTTACGAGGTATTTGATTATGCTGTGGAGAGTAAGAGCCTGACTGA TGTTGCTGCTTATACATCTTTGGAGACTACCCTGAAATGGCTGAAGAAAGCTAGAGAGCAAGGCCTCGCTGTCTGA
AA sequence Show only first row Show all	>Lus10041832 pacid=23146913 polypeptide=Lus10041832 locus=Lus10041832.g ID=Lus10041832.BGIv1.0 annot-version=v1.0 MRKVYDQNATPGKREKGCRRKDRMGKIPLSFRSAVPSSSALIKSAHESQSISDQPRQFLKKAIKRKPTRPSAEQDSARRQHHKPLVNSPDLNEAKRLFNS LVATARAPLELRFNNAFLQSYASISTPDKSIALLQHMSKTLASFSPDRSTFHILLPHGSASPDSSLALATVRQMLNLMVNRGFSPNQVTVDIAIRSLCSA GHVDEAIELVKELSSKDCKPDSHTYNFIIKSLCKTRALSTVYAFIKEFSNSFGVEPDVVSLTILIDNVCNSKNLREATMLVGVMEAFGHKPDCFVYNTIM KGYCVLSKGSEAIGLYNQMKEEGVEPDMITYNTLIFGLSKSGRVSEATKYLKVMVEAGYLPDTITYTSLMNGLCRERNVMGAMKLLEDMKENGCAPNART YNTLLHGLCKGRMLEKGIKLYGMMKEVGMQLDNASYSTFVRALCKEGKVAEAYEVFDYAVESKSLTDVAAYTSLETTLKWLKKAREQGLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	1.0	0.9576
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	3.0	0.8966
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	3.5	0.9039
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10025418 [exp]	4.9	0.8905
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	5.5	0.9124
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	5.7	0.9135
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	6.5	0.8526
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10021011 [exp]	8.4	0.8362
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	10.9	0.8997
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	11.6	0.8676

Compare expression of checked genes

Lus10041832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.