Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35680 120 / 6e-31 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 109 / 4e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 99 / 3e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 92 / 1e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 90 / 7e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 88 / 2e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51410 86 / 2e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 81 / 1e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 81 / 1e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 77 / 5e-16 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028380 [exp] 431 / 7e-154 AT4G35680 129 / 4e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 122 / 5e-33 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 118 / 2e-31 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 115 / 2e-30 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 113 / 1e-29 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 110 / 1e-28 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 109 / 3e-28 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 108 / 4e-28 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 108 / 8e-28 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103400 [exp] 197 / 1e-61 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 183 / 3e-56 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 109 / 9e-28 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 108 / 1e-27 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 108 / 1e-27 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 108 / 2e-27 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 107 / 4e-27 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 103 / 9e-26 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 100 / 2e-24 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 100 / 2e-24 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10041833 pacid=23146705 polypeptide=Lus10041833 locus=Lus10041833.g ID=Lus10041833.BGIv1.0 annot-version=v1.0 ATGGCAATCTATACATACATTGCACCAGTAAGGTCAATCAGCCTACCTAATTCCAGAATCCACCCCACTTCCCTCAAATTCCAATCTACCCTCACCAAGC TCAAATCATGGGAATCATCTTCTTCACCATGTTCAACTTCACAAACACAGCCTATACTAGGACACGATATCGAAACAGGATTGGCGAGGCTCGTGGAGTT GTTCGACCGAGTCGAACAACTCCTCCAATCTCCCCTGGCCAGGAACTCATTACAACACCACCATCAAGAAGTAGAAGATGCATTGGAGGGCTCGGTGAGA CTGCTAGACGTGTGCAATATGGCCAAAGAGCTAATCCAAGCAATGAAGGATCATGTCAATGGACTGCAATCGGCATTGAGAAGAAGGGGAAATTCCAGCA GCATACATGAGAACATCCAAGCTTACTTCACTTTCAGAAAGAAGGCCAGGAAATCTGTGACCACGTCACTCAGACTGCTTTCGAAAAAAATATCCCACCG TGACAACAACCTGGTCATTCAGTCAACTAGGGAAGCGAGCAGCGTTGCAGCTTCAGTGTTTGAATCTCTTTTCATGTTCTTATCGTCGCCTAACAGTAGG GGATCATGGGCGGTGATGAAGTCGAAGCTGGTTCGATCTGGGGAACCGGTTCTGAGTTTTGTCAACAACGAGGTGGGGAGTGTGGATGCTGCTCTGTGTA AGTATACAAAGATTAATGATGTGAAGGAAGTGCAGAGGAGGTTGGAGGTTCTTGATGGATGTATTCAAGGGATTAAGGCTAAGTTAGAAAGCGTGTTTCG GTGCTTAATTAAGAATCGAGTTTCGTTACTTAATCTTGTTACTCCCTTTTGA
AA sequence Show only first row Show all	>Lus10041833 pacid=23146705 polypeptide=Lus10041833 locus=Lus10041833.g ID=Lus10041833.BGIv1.0 annot-version=v1.0 MAIYTYIAPVRSISLPNSRIHPTSLKFQSTLTKLKSWESSSSPCSTSQTQPILGHDIETGLARLVELFDRVEQLLQSPLARNSLQHHHQEVEDALEGSVR LLDVCNMAKELIQAMKDHVNGLQSALRRRGNSSSIHENIQAYFTFRKKARKSVTTSLRLLSKKISHRDNNLVIQSTREASSVAASVFESLFMFLSSPNSR GSWAVMKSKLVRSGEPVLSFVNNEVGSVDAALCKYTKINDVKEVQRRLEVLDGCIQGIKAKLESVFRCLIKNRVSLLNLVTPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35680			Arabidopsis protein of unknown...		Lus10041833 [exp]	0	1
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	5.8	0.8534
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	10.5	0.8584
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	23.5	0.7782
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	28.8	0.8444
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	30.7	0.7867
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	31.1	0.7734
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	32.8	0.8113
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006460 [exp]	38.2	0.8238
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10020968 [exp]	40.5	0.8093
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10027093 [exp]	48.7	0.8161

Compare expression of checked genes

Lus10041833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.