Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35690 115 / 2e-31 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 102 / 3e-26 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 100 / 1e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 100 / 1e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 92 / 2e-22 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 89 / 2e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 85 / 1e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 79 / 3e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 71 / 3e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 65 / 2e-12 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028381 [exp] 248 / 1e-82 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 105 / 1e-27 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 103 / 8e-27 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023963 [exp] 98 / 6e-26 AT2G17080 139 / 6e-42 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014448 [exp] 99 / 4e-25 AT2G17080 189 / 4e-60 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 97 / 3e-24 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 96 / 7e-24 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 96 / 1e-23 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 95 / 1e-23 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103700 [exp] 144 / 2e-41 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 136 / 3e-39 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 92 / 4e-22 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 89 / 7e-21 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 86 / 5e-20 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 85 / 2e-19 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 83 / 7e-19 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 82 / 1e-18 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 82 / 1e-18 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 82 / 2e-18 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10041834 pacid=23147061 polypeptide=Lus10041834 locus=Lus10041834.g ID=Lus10041834.BGIv1.0 annot-version=v1.0 ATGGCAGCCAAATTCCAAACGAGATCCGTCAGCTTACCATCGCGATCCCACCCTACGACGGTGAAGATCGACGAGGAGCTCCACAAGCTGAGAGCATTCA ACGACGTTGTAGCATCCACATCTGGGTCGTCTTCTTCGATCTGCAACGCACTTTCAGGTTTGGAAGAGGTCTACAACTGCTTTGAAGAGCTTCTTAACAT GTCGTCGACTCAAGAAGCTCTGGCTCGCAGCTTAAATGGAAAATGCCTCGAGGAGTTGATGGACGGATCAGTGAAGCTTCTCGACACTTGCGAGGTTTCC AAAGATGTGATATCAAGGTTGAAGGAGGAAGTGGCAGCACTTCAGTCTGCAATTCGAAGGAGGAGGAGTAAAGGAAAGAGTTTCGAATCCGAATTCGAAT CCTCTGTTTCGAGATACGTCTCGTTGAGGAAGAAGGCGAGGAAAGATGTGAAGAAATTGTCTGCTACTTTGAAACTGATGGATAACGGGAAAGCGATTCC GTTGTCGTTTTACAACGACGAGAAGGAGTTTGTTCAGAGGGAGCTGTTGGGAGATGTTGAAGGGAAGTTTGAAGATGTTGAGAAGAGGTTGGAGAGTTTG TTCAGGAAGATGATCAAATCAAGAGCTTCTCTGTTGAACATTCTGTCTCAATAA
AA sequence Show only first row Show all	>Lus10041834 pacid=23147061 polypeptide=Lus10041834 locus=Lus10041834.g ID=Lus10041834.BGIv1.0 annot-version=v1.0 MAAKFQTRSVSLPSRSHPTTVKIDEELHKLRAFNDVVASTSGSSSSICNALSGLEEVYNCFEELLNMSSTQEALARSLNGKCLEELMDGSVKLLDTCEVS KDVISRLKEEVAALQSAIRRRRSKGKSFESEFESSVSRYVSLRKKARKDVKKLSATLKLMDNGKAIPLSFYNDEKEFVQRELLGDVEGKFEDVEKRLESL FRKMIKSRASLLNILSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	0	1
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	2.0	0.7665
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10028222 [exp]	4.9	0.7344
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	8.9	0.7153
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10028178 [exp]	11.5	0.7277
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10034928 [exp]	13.3	0.7192
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	13.6	0.7327
AT5G21050			unknown protein		Lus10019547 [exp]	14.7	0.7160
AT3G13440			S-adenosyl-L-methionine-depend...		Lus10008072 [exp]	15.4	0.6251
AT5G50335			unknown protein		Lus10001469 [exp]	19.4	0.7488
AT5G50335			unknown protein		Lus10008207 [exp]	23.0	0.7315

Compare expression of checked genes

Lus10041834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.