Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35690 84 / 2e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 82 / 8e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 74 / 4e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 58 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76240 53 / 9e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 52 / 3e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 51 / 8e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 45 / 3e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 45 / 5e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 43 / 0.0002 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028382 [exp] 559 / 0 AT4G35690 95 / 2e-22 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 90 / 3e-20 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041833 [exp] 71 / 2e-13 AT4G35680 130 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10005000 [exp] 67 / 2e-12 AT2G17070 99 / 4e-24 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028380 [exp] 64 / 2e-11 AT4G35680 129 / 4e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 61 / 2e-10 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10012278 [exp] 56 / 6e-09 AT1G76210 162 / 1e-49 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 55 / 3e-08 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 53 / 7e-08 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103800 [exp] 180 / 2e-54 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 116 / 9e-30 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 106 / 2e-26 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 102 / 9e-25 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 94 / 6e-22 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 89 / 3e-20 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 84 / 4e-18 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 82 / 9e-18 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 82 / 1e-17 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 81 / 4e-17 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10041835 pacid=23146931 polypeptide=Lus10041835 locus=Lus10041835.g ID=Lus10041835.BGIv1.0 annot-version=v1.0 ATGTTGAAGATTGCATCGCCAAGGGCGTCCTTCTCCTCCTCCACAAAGCCAATCCGATCCCGCAACCTTCGATCCATAAGCTTCCCGGCTCGCTCGAGCT CCAACGTGCAGAAACTCGAACAAGAGCTCAACAAGCTGATAACCTCTTCGCTCGAGCCGCCATCGCCATTGTTACCGCTAGACCAAGGCATCATCGCTCG CCTCTCGAGCGTTTCGGAGGTCTACAGGCGCATAGGCGAGCTCCTGAGCCAGCCTGGTGCCCACCAAGCCTTGACTTCGCACGAAGACAGTCAGTGGGCC CACCACACGTCGGACGACCTGATAAGGTATCTAGACGCGTGTACCAACACGCGTGACACTCTCCTGGCTATGCAGGAGAGCGCCAGAGACCTGTTGTCGT CCCTTCGACGGAGTATCAAGTCGAAGGGATCGATATCGATTGAGTGTGGGGTCGTCGAGACTTGTATAAGCAGCTTCCTAATTCTGCGTAAAAACGCAAA AAAGGAAGCTGTCAAATCCCTAGCCAACCTGAAGCAAGTCGGGGCTAGATTAGACAATTACGGCCACGTAGGGTCATTAGGTAATGACCTTTACACGGCC GCGACAGTGGGAGCGGTGAGAGAGGCGAGTTACCACACGGTTTCGGTTTTCGGAGAGCTTCTCTCGCGCCTCTCAGCGAAGTCTTCGAAGACCGGAGGCA AGTGGTCGCTGGTGGCGAAGCTGGTGCATATCAAAGGGTGCGAATTCGAGAGTGGTCATAAGAAGAAGATGAATGAGTTGGAGAGCGTGGTGGCAGTGCT ACATGAGTTGTGCTATTCGATCAAGGACTCAGAGGCGACAGAGGGTGGCGGCTCCGGCCGTGATTATATGGCAGTGGTTGAATTGGCACAGAGGAGGTTG GAGGTTTTGGATAGGAGTATTGGAGGAGTTGAGAAGGAGCTTGAGTGTTTGTTCAAACGGTTAATTCAAGCTCGAGTTTCCCTCCTCAACTTGCTTTCCC ACTAA
AA sequence Show only first row Show all	>Lus10041835 pacid=23146931 polypeptide=Lus10041835 locus=Lus10041835.g ID=Lus10041835.BGIv1.0 annot-version=v1.0 MLKIASPRASFSSSTKPIRSRNLRSISFPARSSSNVQKLEQELNKLITSSLEPPSPLLPLDQGIIARLSSVSEVYRRIGELLSQPGAHQALTSHEDSQWA HHTSDDLIRYLDACTNTRDTLLAMQESARDLLSSLRRSIKSKGSISIECGVVETCISSFLILRKNAKKEAVKSLANLKQVGARLDNYGHVGSLGNDLYTA ATVGAVREASYHTVSVFGELLSRLSAKSSKTGGKWSLVAKLVHIKGCEFESGHKKKMNELESVVAVLHELCYSIKDSEATEGGGSGRDYMAVVELAQRRL EVLDRSIGGVEKELECLFKRLIQARVSLLNLLSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35690			Arabidopsis protein of unknown...		Lus10041835 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007560 [exp]	1.0	0.9687
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10041404 [exp]	14.4	0.9123
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	17.4	0.9679
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	19.8	0.9529
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	22.4	0.9679
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	26.5	0.9643
AT3G19950			RING/U-box superfamily protein...		Lus10017722 [exp]	28.4	0.8792
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	29.6	0.9616
					Lus10025807 [exp]	32.1	0.9594
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	34.8	0.9592

Compare expression of checked genes

Lus10041835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.