Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35730 339 / 2e-112 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 238 / 1e-71 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 213 / 1e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 202 / 6e-57 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 199 / 1e-55 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 135 / 2e-35 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 127 / 1e-32 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 119 / 2e-29 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 117 / 4e-29 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 109 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028383 [exp] 612 / 0 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 243 / 6e-75 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 241 / 5e-74 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10000978 [exp] 221 / 6e-63 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 216 / 2e-61 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 185 / 3e-55 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041468 [exp] 167 / 1e-46 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 158 / 3e-43 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034330 [exp] 139 / 2e-37 AT1G25420 218 / 3e-69 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059800 [exp] 431 / 3e-148 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 243 / 5e-74 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 242 / 9e-74 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 228 / 2e-71 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.006G149800 [exp] 227 / 4e-65 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G127000 [exp] 153 / 1e-41 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 145 / 5e-40 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 138 / 3e-35 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 134 / 7e-34 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 124 / 2e-30 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10041836 pacid=23146618 polypeptide=Lus10041836 locus=Lus10041836.g ID=Lus10041836.BGIv1.0 annot-version=v1.0 ATGACCGTCGCTAGTGTCGCCGTTTCCTCCTCGAAGAAGTTGGTGAAGTTCACTCTTTCAATCTTCCGTCCCCGTTTCAATTCTTCCAAATGTAAAACGG CGGCCAAGATGACGGTGTCGAGGATAAAGCTTCTGAAGAACAAGAGACAGGCGACTGTGCGGCAGATGAGAAGAGACATTGCTTTGCTTCTCCAGTCCGG CCAGGATGCCACTGCTCGTATCAGGGTTGAGCATGTGATAAGAGAACAGAACGTTTTGGCTGCAAATGAGTTCATCGAGCTCTTCTGCGAGCTAATAGTG TCCAGACTTCAAATCATCGCAAAGCAAAGGGATTGTCCAGCGGACTTGAAAGAAGGAATTGCAAGCTTGATTTTTGCAGCCCCAAGGTGCTCTGAGATCC CAGAACTACTTCAATTGAAGGATATTTTCGAAAAGAAGTACGGAACCGATTTTGTCAGTGCTGCAGTTGATTTGCGACCTAGCTGTGGTGTTAATCGTAT GTTGATCGACAAGCTCTCCGTTAGAACACCTAGCGGTGAAGTGAAGCTGAAAGTTCTGAAAGAAATTGCGAAAGAGCACCAGATCGAATGGGATACAACC GAGTCCGAGGAGGAGCTCCTTAAGCCCCCGGAAGAGCTCATCGATGGACCTTCCTCATTTGCCGCTGCTTCAAGCTTTCCTGTTAAGCTACGTCCTAATT ACTCTTTTCAAGCAGATAAACCAACCGTCAGATCAAGTAATGAAGTTCAACCCGGTAGCACTTATTTTGGAGATGCGGCAACTGCTGCTGATGCAGCTGC AAAATCTGCAAAGCAAGCAATTGAAGCTGCAAAAGCTGTATCTTACTTGGCTAATAGGGACTTGAATCAGACCTCTGGATCCAATCATAATGTGAGTGCT CCTTCAGGGTTTGGCATGCCAATGAACCTTCAGATGGATTCGAATCAGAGCTTCAATGGATCTCATTATCCAAGCAATGAAGGGACCATACCTATACAGG GCCACTCTGGCCGTGTCAATCGGAGGCACAGCTACAATGTGGCACCAACAACAACACGGAATGATGTCGATCAACCTTCGTACAGAAGGTACAGCTACAA TGACACAAGGCCAGTCCAGGAACATGACCAGTCTGATGACCATGGGACAATTGATGATGAAGGCTCCTCCCCACATTCTGAACTCTTGTTTGACGAATCG GAATGCGATGAAGAAATTGAAATGGAAGAACCAAGTGGTAATGCTCATCCTCCACCACCTATGCGACCTCCACCGCAGGTTCCTACAGGTCATCATCATC CTAAGTTGCCAGACTACGATGAGATTGCTGCACGCTTCGAAGCTCTGAAATGCCGCAAACCAAAGCCTTAG
AA sequence Show only first row Show all	>Lus10041836 pacid=23146618 polypeptide=Lus10041836 locus=Lus10041836.g ID=Lus10041836.BGIv1.0 annot-version=v1.0 MTVASVAVSSSKKLVKFTLSIFRPRFNSSKCKTAAKMTVSRIKLLKNKRQATVRQMRRDIALLLQSGQDATARIRVEHVIREQNVLAANEFIELFCELIV SRLQIIAKQRDCPADLKEGIASLIFAAPRCSEIPELLQLKDIFEKKYGTDFVSAAVDLRPSCGVNRMLIDKLSVRTPSGEVKLKVLKEIAKEHQIEWDTT ESEEELLKPPEELIDGPSSFAAASSFPVKLRPNYSFQADKPTVRSSNEVQPGSTYFGDAATAADAAAKSAKQAIEAAKAVSYLANRDLNQTSGSNHNVSA PSGFGMPMNLQMDSNQSFNGSHYPSNEGTIPIQGHSGRVNRRHSYNVAPTTTRNDVDQPSYRRYSYNDTRPVQEHDQSDDHGTIDDEGSSPHSELLFDES ECDEEIEMEEPSGNAHPPPPMRPPPQVPTGHHHPKLPDYDEIAARFEALKCRKPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	0	1
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	1.0	0.9800
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	1.4	0.9769
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	2.0	0.9616
					Lus10030118 [exp]	3.5	0.9537
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	6.2	0.9652
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014236 [exp]	7.1	0.9444
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	10.1	0.8802
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	13.0	0.9472
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006853 [exp]	13.7	0.9130
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	14.4	0.9456

Compare expression of checked genes

Lus10041836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.