Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51390 326 / 8e-111 DHHC-type zinc finger family protein (.1) AT4G24630 69 / 8e-13 DHHC-type zinc finger family protein (.1) AT3G48760 69 / 1e-12 DHHC-type zinc finger family protein (.1) AT5G50020 66 / 8e-12 DHHC-type zinc finger family protein (.1.2) AT3G56930 66 / 9e-12 DHHC-type zinc finger family protein (.1.2) AT2G14255 66 / 2e-11 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G56920 65 / 2e-11 DHHC-type zinc finger family protein (.1) AT2G40990 64 / 3e-11 DHHC-type zinc finger family protein (.1) AT5G05070 64 / 4e-11 DHHC-type zinc finger family protein (.1) AT3G26935 62 / 1e-10 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028384 [exp] 583 / 0 AT3G51390 374 / 2e-129 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 77 / 3e-15 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 76 / 9e-15 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10028687 [exp] 72 / 8e-14 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10008037 [exp] 71 / 4e-13 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038108 [exp] 69 / 2e-12 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10028737 [exp] 68 / 2e-12 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 67 / 7e-12 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 66 / 1e-11 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104700 [exp] 401 / 2e-140 AT3G51390 374 / 1e-129 DHHC-type zinc finger family protein (.1) Potri.007G060100 [exp] 397 / 1e-138 AT3G51390 341 / 1e-116 DHHC-type zinc finger family protein (.1) Potri.005G104800 [exp] 293 / 8e-99 AT3G51390 274 / 1e-91 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 77 / 3e-15 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.018G121200 [exp] 74 / 2e-14 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G061800 [exp] 74 / 3e-14 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.005G195300 [exp] 70 / 6e-13 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G287000 [exp] 68 / 2e-12 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G027500 [exp] 67 / 5e-12 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 66 / 1e-11 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041837 pacid=23146635 polypeptide=Lus10041837 locus=Lus10041837.g ID=Lus10041837.BGIv1.0 annot-version=v1.0 ATGGGGCTTCTCGATCCATGCCGCAACGCCTTCAATCGTGCACTCGATCGATTCCTCGATGTCTTCCCTTGTTTAGCCGATCCCGGGAGGAGATCTTCGT TGGGATTGAGATTGGCATTGGTGTTGCTTCATCTACTCTATGCCGGAGTTCTCTTTCTCTTCGACACTGATTTGATTGAGAGAGCAAAGCAACAGCCTTG GTATACTGCTCTGTATGCCTTGTTGTTCTTCTCAACGTTGGTTCAGTACTTCATTACTTCCAGTACGTCTCCGGGCTATGTCATCGATGCAATGAGGGAC CTCAATGAGAAAAATGCAGTTGCTAGGCAGGCAGCAATGGCCTCAAAACAGCCTGCTTCGAGTAAAAATGGGGACTTTGTTATAACAATTGACGCTGCTC AACAAGGTAGACTGCTTCACGGAAGTCATGTAATGCCATGGACAAAGCTGGTTTTGGATCTGTATCCCACTGGAACATCAGCTAGAAACTGCACGTGTTC CTACTGCAGCGTTGAGCAGCCTCCACGAGCAAAGCATTGTCATGATTGCGACAAATGTGTTCTCCAGTTTGATCATCACTGTGTTTGGCTTGGGACATGC ATTGGTCAGGGAAATCATTGTCGATTTTGGTGGTACATCTGTTTGGAAACAGCATTGGGCTTGTGGACTGTTATCTGTTATATCACGTATGTGAAGGCAG ACGTTTCAAGGGTTTGGTGGAAGTATGCGATTGTGTTACTGCTGGTGATTACTTTGTCGCTCTTCTTGCTATTTCTGCATCTCCTTCTGCTTTTTCATAG CTATCTTATTCTGACAAACCAGACCACCTTTGAACTTGTAAGACGCAGACGAATACCATATTTGAGGGGTATTCCTGAAAGAGTTTATCCCTTCAGTAAG GGAGTGTGTGGGAACTTGTATGATTTCTGTTGGGGTCCTAGAAGCATATACAGCTTGGAACGGATACCTTCAACGGCGGAGCTTGAAGAGAAGTCGAGGC CTTATACCTGCTTCGATATTTTGAGCTGCCGCTGTTGCTAA
AA sequence Show only first row Show all	>Lus10041837 pacid=23146635 polypeptide=Lus10041837 locus=Lus10041837.g ID=Lus10041837.BGIv1.0 annot-version=v1.0 MGLLDPCRNAFNRALDRFLDVFPCLADPGRRSSLGLRLALVLLHLLYAGVLFLFDTDLIERAKQQPWYTALYALLFFSTLVQYFITSSTSPGYVIDAMRD LNEKNAVARQAAMASKQPASSKNGDFVITIDAAQQGRLLHGSHVMPWTKLVLDLYPTGTSARNCTCSYCSVEQPPRAKHCHDCDKCVLQFDHHCVWLGTC IGQGNHCRFWWYICLETALGLWTVICYITYVKADVSRVWWKYAIVLLLVITLSLFLLFLHLLLLFHSYLILTNQTTFELVRRRRIPYLRGIPERVYPFSK GVCGNLYDFCWGPRSIYSLERIPSTAELEEKSRPYTCFDILSCRCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	0	1
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	1.4	0.9116
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	2.4	0.9104
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	3.9	0.9083
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	4.6	0.9053
AT5G06830			unknown protein		Lus10012023 [exp]	4.7	0.9001
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	5.3	0.9066
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10024962 [exp]	6.1	0.8837
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	6.5	0.9054
AT1G17970			RING/U-box superfamily protein...		Lus10034644 [exp]	7.3	0.8938
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	7.5	0.9045

Compare expression of checked genes

Lus10041837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.