Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65770 144 / 3e-39 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT2G17690 137 / 4e-36 SDC SUPPRESSOR OF DRM1 DRM2 CMT3, F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17030 129 / 4e-33 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G44080 115 / 7e-29 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G25750 113 / 6e-28 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65740 111 / 3e-27 UCL1 UPWARD CURLY LEAF1, Protein of unknown function (DUF295) (.1) AT2G26160 108 / 3e-26 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 107 / 1e-25 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65760 102 / 5e-24 Protein of unknown function (DUF295) (.1) AT2G17036 99 / 1e-22 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028385 [exp] 348 / 3e-117 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10025100 [exp] 147 / 2e-39 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 146 / 2e-39 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 93 / 2e-20 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 85 / 2e-18 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10035492 [exp] 50 / 1e-06 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 46 / 3e-05 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105400 [exp] 389 / 1e-133 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 383 / 3e-131 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 323 / 5e-108 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105000 [exp] 254 / 6e-82 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.009G140000 [exp] 173 / 1e-49 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 173 / 4e-49 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.001G277400 [exp] 135 / 1e-35 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 104 / 2e-24 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 59 / 1e-09 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.004G134900 [exp] 52 / 5e-07 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10041838 pacid=23146775 polypeptide=Lus10041838 locus=Lus10041838.g ID=Lus10041838.BGIv1.0 annot-version=v1.0 ATGATCGGCAGTTTACGGTGGGAAGATCTCCCCGACGACCTGTTGGCAGCTATCGGCCGCCTTATCGATTCCCGCATCGACATCCTCCGGTTCCGTTCTG TCTGCAGTTCCTGGCGCTCATCCGTCCCTCTCCCTAACCCCGACGAACAAGTTCCTCCTGTTACCGTCAAGCTTCCTTACCCGGTTGACATCGACGGAGT CCTCGATCAATCCACCATTTGCAAATTTCAGTTTCTATCTCCGATTCAAACCTACTCCTCCTCCTCCCAGGGCTCTTCCTCTTCTTCAGACCCGCCGCCG TCCACCCAAGGGTGGTTGATCAAGGCCGAAGAGTCGCCACGAGGTAAACTGCTGCTTTCCAATCCCATCTCAAACTACAAGCTTGACTACTCTCCGGATC AATTGAACTTGCTCGACGTTCGTCTCGTCCAATTAAGGAATTCCTTTCGCCTTAGTTTGCAAAGTGGACTCCCTACGTTCGAGGTCAATAGAGTCGTCGT GTTTCCACCATCCACCGGCGGCCAATTGACTCTCGTAGCCATTTACTACGAAGGCAAATTAGGGTACTGGAGAAGCGGAGACAAGACGTGGACTCTTATA GACGACAAAAACTTCGAGTACGACGATATCATACCTTACAGAGGCCAATTCTACGTCGTCGATAGGTGGGGGACGGTGTCCTGGATCGATTCCTCCCTCA AGCTCATCCAATACTCCCCGTCGCTGTACGGATGCGGCAGTCAGAAAAATCTGGTGGAGTCGGACGGGGATTTGTACGTGGTGGATAGGTATCTAGATCG AGAGAGGAGGAGCTGGAAAGACGTGGAGAATGCTGTTAACAACAGTTCTGATCCAGCTTCCTTCCTGGTTGGCAGAGGAAGACGTAGGAAGCTGAGCCCA AGGGCTACTGATTTCAGGGTTTACAAGCTGGACGAGGAGTGGGGAACGTGGGTTAATGTGACATCATTAGGAGATAGAATGTTTGTTCTGACGACAGAAT GTTCTCTATCTGTTTCGGCTGCAGAATTTGTGCAAGGGAAAGGAAATTGCATCTACTACTCGGATGATGGTGACTATTTCGCTAGAGGGGTGTTGATTGC TGAGAGTGTTCGGGTGTTTCAGTTCGAGGATCATAGCATCGAGAAACTGGGATTGTTGCCTTCAGGTTTTGATATTTTCCTTCCATCTGCCTCACCGGTT AAAGTCACAGCCACAGGTGAGGCTGTGGCTGATTTTCTTTGGAGGACCGGCCTCGAATGA
AA sequence Show only first row Show all	>Lus10041838 pacid=23146775 polypeptide=Lus10041838 locus=Lus10041838.g ID=Lus10041838.BGIv1.0 annot-version=v1.0 MIGSLRWEDLPDDLLAAIGRLIDSRIDILRFRSVCSSWRSSVPLPNPDEQVPPVTVKLPYPVDIDGVLDQSTICKFQFLSPIQTYSSSSQGSSSSSDPPP STQGWLIKAEESPRGKLLLSNPISNYKLDYSPDQLNLLDVRLVQLRNSFRLSLQSGLPTFEVNRVVVFPPSTGGQLTLVAIYYEGKLGYWRSGDKTWTLI DDKNFEYDDIIPYRGQFYVVDRWGTVSWIDSSLKLIQYSPSLYGCGSQKNLVESDGDLYVVDRYLDRERRSWKDVENAVNNSSDPASFLVGRGRRRKLSP RATDFRVYKLDEEWGTWVNVTSLGDRMFVLTTECSLSVSAAEFVQGKGNCIYYSDDGDYFARGVLIAESVRVFQFEDHSIEKLGLLPSGFDIFLPSASPV KVTATGEAVADFLWRTGLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	0	1
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	2.0	0.9171
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	2.4	0.9093
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	2.4	0.9067
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	5.3	0.8998
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	5.7	0.8851
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	6.3	0.8830
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	6.7	0.8944
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	8.1	0.8687
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	9.8	0.8728
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	12.0	0.8842

Compare expression of checked genes

Lus10041838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.