Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17695 298 / 2e-103 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028386 [exp] 392 / 9e-141 AT2G17695 294 / 1e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105500 [exp] 315 / 3e-110 AT2G17695 296 / 4e-103 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09348 [flax] [poplar] DUF1990 Domain of unknown function (DUF1990)
Representative CDS sequence Show only first row Show all	>Lus10041839 pacid=23146948 polypeptide=Lus10041839 locus=Lus10041839.g ID=Lus10041839.BGIv1.0 annot-version=v1.0 ATGGTTTTCTTGAGCTGGTCGCGACCGTCCCCGAAGGAACAGCAGGATTGCCTCCAGAAGAGCGGTAGCTTCAATTATGATCCCAAGTACAGAGGAGCCT CTGCCAAGCCGCTGAAATCCCTCAAAGAAGACGAAGACCTCGTGAGAGATGGTTTCTTGCTGAACCATGCAAGGGTTCTAGTTGGCTCTGGTGCGGAGAC TTATGAGAAGAGCAAGTCGGCACTTCAGACATGGAAACATTTTGGGTTGAATTGGGCATTCGTCGATCCGAAAACCCCAGTTCAAAGTGGGGCAAAGTTC TGCGTTTGCTTGAAGGAGTTCGTTCCGTGGGTGATGATGCCACTTGAGGTGGTGTATGTGAACGATGTCAAGAATCGTAAGAAGGCCACTGCTTCGTTTG GTTTTGGTAGCGGCACCCTCCACGGCCACTTGCTGGCTGGGGAAGAGCGCTTCTCAGTTGAAATGGATGAGAAGAAGCAAGTGTGGTACGAGATACTGTC ATTGTCCAAGCCAGCCAACTTCCTGTCATTCATAGGGTACCCATATGTGCAACTAAGGCAGAAGTTCTTCGCTCATCAGTCTACCAACGCACTTCTGAAA CATGGTCACACCGTCCCTCTCAAAGCTTCAATCTTTTCACAGGAAGAGCAAACGTTGAACTGTTTGAAGGAGTACACTCAGAACAGGCAAGTTCCATAA
AA sequence Show only first row Show all	>Lus10041839 pacid=23146948 polypeptide=Lus10041839 locus=Lus10041839.g ID=Lus10041839.BGIv1.0 annot-version=v1.0 MVFLSWSRPSPKEQQDCLQKSGSFNYDPKYRGASAKPLKSLKEDEDLVRDGFLLNHARVLVGSGAETYEKSKSALQTWKHFGLNWAFVDPKTPVQSGAKF CVCLKEFVPWVMMPLEVVYVNDVKNRKKATASFGFGSGTLHGHLLAGEERFSVEMDEKKQVWYEILSLSKPANFLSFIGYPYVQLRQKFFAHQSTNALLK HGHTVPLKASIFSQEEQTLNCLKEYTQNRQVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17695			unknown protein		Lus10041839 [exp]	0	1
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	1.0	0.9343
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	3.2	0.9235
AT1G14270			CAAX amino terminal protease f...		Lus10037179 [exp]	5.9	0.9119
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	11.7	0.9185
AT3G16175			Thioesterase superfamily prote...		Lus10037583 [exp]	14.1	0.8203
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	15.0	0.8918
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	15.0	0.8543
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	16.4	0.9174
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Lus10023384 [exp]	16.7	0.8888
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	16.9	0.8636

Compare expression of checked genes

Lus10041839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.