Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35740 837 / 0 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G31360 310 / 3e-94 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT1G10930 304 / 1e-88 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT3G05740 289 / 2e-87 RECQI1 RECQ helicase l1 (.1) AT1G60930 288 / 4e-83 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G27880 187 / 2e-49 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 150 / 3e-37 RECQSIM RECQ helicase SIM (.1) AT5G14610 64 / 4e-10 DEAD box RNA helicase family protein (.1.2) AT3G01540 63 / 5e-10 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT4G33370 59 / 1e-08 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028387 [exp] 1198 / 0 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10015467 [exp] 316 / 5e-92 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10026219 [exp] 300 / 6e-91 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10042451 [exp] 296 / 5e-90 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10033289 [exp] 282 / 2e-83 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 254 / 1e-73 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034434 [exp] 245 / 5e-69 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10004503 [exp] 134 / 7e-32 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10036983 [exp] 125 / 3e-29 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G107400 [exp] 897 / 0 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.005G019800 [exp] 296 / 4e-90 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 298 / 6e-90 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 303 / 4e-88 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.013G161200 [exp] 256 / 6e-73 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 189 / 8e-50 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 142 / 2e-34 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.019G130900 [exp] 64 / 3e-10 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 60 / 5e-09 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 59 / 8e-09 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10041840 pacid=23146730 polypeptide=Lus10041840 locus=Lus10041840.g ID=Lus10041840.BGIv1.0 annot-version=v1.0 ATGACACTCTCGTTGAAGCGATGTCGTACTGGATGGCGCCGAAATCACCGTTGTTTTTGGCGGATGAAATCGAAAAGTTGCTCCGGCTGCCGGCAAATAA AACACTCGTCACCTCATTGGCCTGTAATTGCAGAGCGAGGAAAGCTAAGCTTGCAGGAGAAGCTATTTTTGGGGTTTGGAAACAAAGGCAATAAATTGGT GGAGCAAATGAAGAAGTCGTTGTTTCCGGTGAAGAAAGCATGCGGTGGCGAGAAGCAGATAACCGCGAAGGAAGGTCTCGTGAAGCTTTTGAGATGGCAT TTTGGCCACTCCGATTTCAGAGGCAAACAGTTGGAGGCGATTGAAGCTATTTTATCTGGAAGAGATTGTTTTTGCCTCATGCCTACGGGAGGAGGCAAGT CGATGTGTTATCAAATTCCTGCATTGGCAAAGCCTGGGATTGTGCTTGTGGTTTCTCCTTTAATAGGTATCTTCTTGATCTTCACTAACTGCGTTCTGTT GCTGTTTTGCTGTTTGCTATTTCCAGCTCTGATGGAAAACCAAGTGACTGCACTGAAGGAAAAAGGGATTGCTGCTGAATTTCTATCTTCAACTCAAACA ACCGATGTCAAAAGTAAGATTCATGAAGACCTTGATTCTGGAAAACCATCCACAAGGCTGCTTTATGTAACCCCAGAATTGATTGAAACATCCGGATTTA TGTCAAAGCTCTCAAAGATGCATGCTAGAGGGTTGTTGAATATCATTGCCATTGATGAGGCACATTGCATCTCATCATGGGGCCATGATTTCAGGCCTAG TTATCGCAAATTGTCTTCCTTGCGTACTCGCCTTCCAGTTGTACCGATACTGGCTCTCACAGCTACTGCTGTTCCAAAAGTTCAGAAGGACGTAATAGAT TCATTATGCTTGCAGAGCCCTTTAGTTCTCAAATCTTCTTTTAACCGCCCCAATATACATTATGAAGTAAGATACAAAGATCTTCTAGAAAATGTCTACA GCGATATATCTTCTCTGCTCAAATCCAGCGGTGATGTTTGTGCTATTGTGTACTGCCTTGAAAGAGCAGTCTGCGATGATTTGGCTGTTCGTCTTTCCAA ACATGGCATTTCTTGTGCCGCTTACCATGCTGGCCTGAATAACAAGCTGCGCAGCTCTGTATTGGATGATTGGATATCTTCAAGAACACAAGTTGTTGTA GCCACGGTGGCTTTTGGGAAAGATGTTAGACTGGTTTGCCATTTTAATATACCGAAGTCAATGGAAGGCTTTTATCAAGAATCAGGCAGGGCAGGGCGTG ATCAATTGCCATCTAAGAGCATTCTGTATTATGGAGTTGACGATCACAAAAAAATGGAGTATATTATAAGTAATGCTGAGAGCAAGAAATGGCAGCCCTT AGGTTCACAGGAAGAGTCATCAAAGAAATCCCTTGCTGATCTTAAGCAGATGGTTGAATACTGTGAAGGTTCTGGGTGCCGTAGGAAAAAGATTCTTCAA AACTTTGGGGAACAGGTTCCTTCATCACTATGTCAAAAAACATGTGACGCATGCAAGCATCCTCACCAAGTTACTCAGTGCTTAGAGAAGCTGGGAACTG TTGGTCGACAAAGAAGCGGGCCTTCTCGAATATTCATGAGCAGCTCCAATGACATGGTAAGCGGGAAGCAAATGTCTGAGTTCTGGAATCGTGACGATGA AGCCAGTAGTTCCGACGAAGAAATCTCCGATTGCGAAGGTGATTCTTCCCTTCTCCATCCTCGTATTCGTGATACCCACTTGAAGTTTACCAGAAGAGCG GGACTGAACGAGAAGATGGAGCTCCTGGAAAGAGCCGAAGAAAAATACTATGGGAACCAAAACCAACAATCGAATAAGCCCAACAAGAACGCCATAACTG AAGCACTGAGAGATGCCAGTAGAAAAAGACTATTAGATTCCCTAACGCAGGCCAACCAGCGTCTTGGCAACCTAAGCATTGAGATGGAAACATCTGCCAG CTTCCTTGAAAAGCAGTGTTTCAACAAGTACGGGAAGGTCGGGAGATCTTTCTATTATTCTCAGGTCGCAAGCACCGTAAGGTGGCTATCTACTTCAACA GCTTCGGACTTGACAAATCGACTCGGCAATACACCTTCGAACGAACCGGTCAGGACTTCCCCAATACCCGCCAGCTTGCCAGTACTTTCACAAGTACAGC CATCGCCAGAAACAGAGGTTCCTGCCATTGAATCATGGAGTTCACCAGCTGCAAGCACTCCACCTACACTGCATCCTCCTTCTGCCTCCACAAAACTCCC ACAAATCCCTTCTTTCTCAGAGTTTGTCAACCGAAAGAAGTCAACAATTCCCATCAACCATTCAAGTTCATCACACGATTCATCTTCTCCGAATCCCAAG AGACAGAGGAAGACATGA
AA sequence Show only first row Show all	>Lus10041840 pacid=23146730 polypeptide=Lus10041840 locus=Lus10041840.g ID=Lus10041840.BGIv1.0 annot-version=v1.0 MTLSLKRCRTGWRRNHRCFWRMKSKSCSGCRQIKHSSPHWPVIAERGKLSLQEKLFLGFGNKGNKLVEQMKKSLFPVKKACGGEKQITAKEGLVKLLRWH FGHSDFRGKQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIGIFLIFTNCVLLLFCCLLFPALMENQVTALKEKGIAAEFLSSTQT TDVKSKIHEDLDSGKPSTRLLYVTPELIETSGFMSKLSKMHARGLLNIIAIDEAHCISSWGHDFRPSYRKLSSLRTRLPVVPILALTATAVPKVQKDVID SLCLQSPLVLKSSFNRPNIHYEVRYKDLLENVYSDISSLLKSSGDVCAIVYCLERAVCDDLAVRLSKHGISCAAYHAGLNNKLRSSVLDDWISSRTQVVV ATVAFGKDVRLVCHFNIPKSMEGFYQESGRAGRDQLPSKSILYYGVDDHKKMEYIISNAESKKWQPLGSQEESSKKSLADLKQMVEYCEGSGCRRKKILQ NFGEQVPSSLCQKTCDACKHPHQVTQCLEKLGTVGRQRSGPSRIFMSSSNDMVSGKQMSEFWNRDDEASSSDEEISDCEGDSSLLHPRIRDTHLKFTRRA GLNEKMELLERAEEKYYGNQNQQSNKPNKNAITEALRDASRKRLLDSLTQANQRLGNLSIEMETSASFLEKQCFNKYGKVGRSFYYSQVASTVRWLSTST ASDLTNRLGNTPSNEPVRTSPIPASLPVLSQVQPSPETEVPAIESWSSPAASTPPTLHPPSASTKLPQIPSFSEFVNRKKSTIPINHSSSSHDSSSPNPK RQRKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	2.0	0.8261
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	5.7	0.7966
AT3G52260			Pseudouridine synthase family ...		Lus10040385 [exp]	6.3	0.7453
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10018933 [exp]	7.5	0.7805
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	13.1	0.8004
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	13.2	0.7857
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	13.3	0.7603
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	16.0	0.7496
AT3G63510			FMN-linked oxidoreductases sup...		Lus10029508 [exp]	24.7	0.7588
AT2G26270			unknown protein		Lus10009795 [exp]	27.6	0.7263

Compare expression of checked genes

Lus10041840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.