Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35750 301 / 4e-105 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 178 / 2e-56 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 62 / 2e-11 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028388 [exp] 385 / 2e-138 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 262 / 1e-89 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 260 / 6e-89 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 201 / 4e-65 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 201 / 4e-65 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 67 / 4e-13 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 62 / 3e-11 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 59 / 5e-10 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014700 [exp] 277 / 8e-96 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 271 / 2e-93 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 259 / 1e-88 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 200 / 1e-64 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.008G093100 [exp] 61 / 6e-11 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 61 / 8e-11 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041841 pacid=23146686 polypeptide=Lus10041841 locus=Lus10041841.g ID=Lus10041841.BGIv1.0 annot-version=v1.0 ATGTGCAGCGGTCAGATTTCGGAGTCCGAACAGCTGCAGCTTCTCGAGAAGCTGGAGGTTTTCAGGATCCACGGCAGAGATAAGCGCGGTCTCAAGGTTT TGCGGATCATCGGCAGATATTTTCCTTCACGATTGGTGACAGCTGAGGCGCTTAAGAAGTATCTGGAGACCAAGATCTTCCCCAAGCTGAGCAAGAAGCC GTTCACAGTCTTGTACCTGCACACCGGGGTTCAAAGATCGGATAACTTCCCTGGCATATCCGCGCTCCGATCGGTCTACGATGCTATCCCGGCCAACGCG AAGGATAATCTCCAGGCCGTTTACTTCGTCCACCCAGGCCTTCAGGCCAGACTCTTCCTCGCCACCTTTGGCCGTTTCCTCTTCACCGGAGGATTATACG GGAAGCTGAAATACATTAGCAGGCTCGATTATCTTTGGGAGCACATCAGGAGGAACGAGGTCGAGATTCCGGAGTTTGTGGCCGATCACGACGAGGATTT GGAAGATCGCCCGATGATGGATTACGGAATTGAGAGTGATCATCCCAGAGCTAGCGGCGGCAGGATGGCCATTATGGATTCCCCTGTTTCCACCTACTCC ATGAGATGCATCTCGTAG
AA sequence Show only first row Show all	>Lus10041841 pacid=23146686 polypeptide=Lus10041841 locus=Lus10041841.g ID=Lus10041841.BGIv1.0 annot-version=v1.0 MCSGQISESEQLQLLEKLEVFRIHGRDKRGLKVLRIIGRYFPSRLVTAEALKKYLETKIFPKLSKKPFTVLYLHTGVQRSDNFPGISALRSVYDAIPANA KDNLQAVYFVHPGLQARLFLATFGRFLFTGGLYGKLKYISRLDYLWEHIRRNEVEIPEFVADHDEDLEDRPMMDYGIESDHPRASGGRMAIMDSPVSTYS MRCIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	0	1
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	1.4	0.9213
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	2.8	0.8866
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	2.8	0.8751
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Lus10012962 [exp]	3.0	0.8626
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	3.7	0.8674
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	7.4	0.8734
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	8.1	0.8716
AT5G35460			unknown protein		Lus10017161 [exp]	9.5	0.8413
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	11.4	0.8272
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	12.2	0.8770

Compare expression of checked genes

Lus10041841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.