Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35760 309 / 2e-102 NAD(P)H dehydrogenase (quinone)s (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028389 [exp] 591 / 0 AT4G35760 327 / 4e-110 NAD(P)H dehydrogenase (quinone)s (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106500 [exp] 340 / 2e-114 AT4G35760 385 / 3e-133 NAD(P)H dehydrogenase (quinone)s (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07884 [flax] [poplar] VKOR Vitamin K epoxide reductase family
Representative CDS sequence Show only first row Show all	>Lus10041842 pacid=23147062 polypeptide=Lus10041842 locus=Lus10041842.g ID=Lus10041842.BGIv1.0 annot-version=v1.0 ATGGCGAGGAGGTTAATGAGCATCTCGTCGTCGTCGTCCTGCTCATCTGCTCAACTCATTCCACGAGCCTCTTCTTTTTCAACCGCTCCTTCTTCCCTCC GTCCTCATTTCCCGTCCTCCTCCTCTACTGCAGCTGCTGGTTCACTTCACTTCAAGGTACTCGATCATTTTCCTCGTCTCTTGTCTCCTCCGATCTACTT CAGCTGTTTTTTCCTGATTTCTAATCGACTCTTGATGCGTTTTCATAAGGTGGAATCGAGATGGAGAGTGAAGTGCATGAGTTCCCCAGACACCAAATCT GAAGCAACTTCATCCTCCCAATCTTCCACTTCTTCAACGACTGCTTCTCCTCCTCCTTCTTCCTCCAGATCATCCTCGTTCTATTGGTCTGCCGCTCTTG GGAGCATAGGATTCTCTGAAACTGCCTACTTGACTTACCTTAAGCTCACTAATTCCACTGCATTTTGTCCACTTGATGCCGGAGCTGCGGGTGGATGCAC CGACATTCTCTCCAGTGATTACTCCGTCGTTTTCGGGGTTCCTCTTCCTTTGATTGGGATGGCTGCTTACGGCTTGGTAGCTGCACTCAGTCTGCAGTTA TCTACCAATAAGTTGCCGTTTGGGGTTGGAGAGACTGGTGGTTGGAAGGCAATTTTGCTTGGAACAACCACCTCCATGGCAGCTACTAGTGGATATCTTC TCTACATCTTAACAACTCAATTCCCTGGAGAATCCTGTCCTTATTGCCTCTTCTCGGCTTTCTTGTCATTTAGCTTATTTTTAATAACCATTAAGGATAT TGGCTGGCAGGAGACACAGAAGACACTGGGTTCACAGTTGTTTATTGCGAGTGTGGTAATTGCTAGCTTGAGATTCTCATACGGAGCTCCTCTACCTTTC ATGCCCAAGGAACCTGAGATCAACCTAGAATATGTTCCAACGGAGATAACAACCCCATCAACTCCTTTTACCGTCTCTCTTGCAAAGCATCTACGCTCTA TTGGTGCCAAAATGTACGGGGCGTTCTGGTGTTCTCACTGTATCGAGCAAAAGCAGATGTTTGGAGAAGAGGCGTCCAAGCAGTTGAACTACCTGGAATG TTTCCCAGATGGATTGAACAAAAACACGAAAATGGCCCTCGAATGTGTAGCCTCCGACATTAAGGGATTCCCAACATGGGTGATTAATGGCGAGGTAATA GGTGGGGAGCTTACCCTATCTGAGCTTGCGGAGAAATCTGGATTCCAGCAGCTAAACGGTAATCAATTGTCTAGTCCAACCTTGACGGAATAG
AA sequence Show only first row Show all	>Lus10041842 pacid=23147062 polypeptide=Lus10041842 locus=Lus10041842.g ID=Lus10041842.BGIv1.0 annot-version=v1.0 MARRLMSISSSSSCSSAQLIPRASSFSTAPSSLRPHFPSSSSTAAAGSLHFKVLDHFPRLLSPPIYFSCFFLISNRLLMRFHKVESRWRVKCMSSPDTKS EATSSSQSSTSSTTASPPPSSSRSSSFYWSAALGSIGFSETAYLTYLKLTNSTAFCPLDAGAAGGCTDILSSDYSVVFGVPLPLIGMAAYGLVAALSLQL STNKLPFGVGETGGWKAILLGTTTSMAATSGYLLYILTTQFPGESCPYCLFSAFLSFSLFLITIKDIGWQETQKTLGSQLFIASVVIASLRFSYGAPLPF MPKEPEINLEYVPTEITTPSTPFTVSLAKHLRSIGAKMYGAFWCSHCIEQKQMFGEEASKQLNYLECFPDGLNKNTKMALECVASDIKGFPTWVINGEVI GGELTLSELAEKSGFQQLNGNQLSSPTLTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10041842 [exp]	0	1
AT1G55365			unknown protein		Lus10010316 [exp]	1.4	0.8391
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	5.3	0.8117
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	6.5	0.8370
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	10.2	0.7894
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	15.9	0.7897
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	19.1	0.7613
AT4G37440			unknown protein		Lus10014864 [exp]	19.5	0.7828
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10006208 [exp]	22.9	0.7518
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	23.0	0.7465
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	26.5	0.7781

Compare expression of checked genes

Lus10041842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.