Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35770 181 / 1e-58 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT5G66040 166 / 1e-53 STR16 sulfurtransferase protein 16 (.1.2) AT5G66170 112 / 4e-32 STR18 sulfurtransferase 18 (.1.2.3) AT2G21045 99 / 1e-26 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G17850 89 / 1e-22 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 60 / 3e-11 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G24750 44 / 3e-05 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G42220 39 / 0.0008 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028390 [exp] 268 / 8e-93 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10005635 [exp] 157 / 4e-49 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10041525 [exp] 146 / 5e-43 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10012566 [exp] 140 / 9e-43 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10041895 [exp] 91 / 5e-23 AT5G66170 116 / 3e-33 sulfurtransferase 18 (.1.2.3) Lus10028442 [exp] 89 / 3e-22 AT5G66170 119 / 2e-34 sulfurtransferase 18 (.1.2.3) Lus10041894 [exp] 88 / 3e-22 AT5G66170 120 / 1e-35 sulfurtransferase 18 (.1.2.3) Lus10021227 [exp] 84 / 1e-20 AT5G66040 73 / 4e-17 sulfurtransferase protein 16 (.1.2) Lus10028441 [exp] 68 / 1e-14 AT5G66170 89 / 9e-24 sulfurtransferase 18 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106400 [exp] 210 / 3e-69 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.002G014900 [exp] 163 / 2e-51 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.014G131300 [exp] 113 / 3e-32 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G111200 [exp] 106 / 2e-29 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.012G020700 [exp] 58 / 3e-10 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 54 / 8e-09 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 50 / 1e-07 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G059200 [exp] 45 / 9e-06 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10041843 pacid=23146951 polypeptide=Lus10041843 locus=Lus10041843.g ID=Lus10041843.BGIv1.0 annot-version=v1.0 ATGGAATCCTGCAGATCAATTGTTTCGTCCAGTACTGCTGGTTTGACCGCCGCTTCGCTTGCTCCGCTTCTTCACCTTCCTTCAAATGTGAAAGTCTTCT CCAGGGTACAATCTCATTCCCAGTTGAGGAAAATACCAATTACTAACAGCAGGAGGAGGATCTCAAGATTCTGCACGAAGGCGGTGGTGGGGGAGAACTT GAATGCGGCAGCCGTTCCGACATCAGTGCCAGTAAGAGTAGCGTATGAACTTCTGCTAGCTGGGCATCGCTACCTTGATGTCAGGACACCGGAAGAGTTC AGCGCAGGACACCCAGAAGGAGCAGTCAATGTTCCTTACATGTATAGAGTTGGTTCAGGTTTGGCAAAGAACCCAAAATTTGTAGAGCAAGTTTCATCAC AGTTTGGCAAGTACAATGAGATCATTGTTGGTTGTCAGCTGGGGAAAAGGTCTATGATGGCGGCAACTGATCTTTTAGCTGCCGGTTTTATGGCAGTGAC AGACATAGCGGGCGGGTATGCAGCTTGGACGCAGAATGACCTCCCGACTGAGAAGTAA
AA sequence Show only first row Show all	>Lus10041843 pacid=23146951 polypeptide=Lus10041843 locus=Lus10041843.g ID=Lus10041843.BGIv1.0 annot-version=v1.0 MESCRSIVSSSTAGLTAASLAPLLHLPSNVKVFSRVQSHSQLRKIPITNSRRRISRFCTKAVVGENLNAAAVPTSVPVRVAYELLLAGHRYLDVRTPEEF SAGHPEGAVNVPYMYRVGSGLAKNPKFVEQVSSQFGKYNEIIVGCQLGKRSMMAATDLLAAGFMAVTDIAGGYAAWTQNDLPTEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	0	1
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	1.0	0.9752
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	2.0	0.9606
AT5G27830			unknown protein		Lus10029881 [exp]	2.4	0.9585
					Lus10028391 [exp]	3.5	0.9391
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	5.7	0.9392
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028246 [exp]	6.0	0.9471
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	7.7	0.9577
AT5G20950			Glycosyl hydrolase family prot...		Lus10013646 [exp]	7.7	0.9368
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	8.4	0.9489
AT3G17940			Galactose mutarotase-like supe...		Lus10010976 [exp]	8.5	0.9132

Compare expression of checked genes

Lus10041843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.