Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35780 790 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 719 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 675 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT1G62400 239 / 9e-74 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 235 / 2e-71 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 222 / 1e-66 Protein kinase superfamily protein (.1) AT1G18160 218 / 3e-61 Protein kinase superfamily protein (.1) AT1G73660 216 / 3e-60 protein tyrosine kinase family protein (.1) AT5G49470 206 / 6e-60 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G03730 211 / 2e-59 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023989 [exp] 730 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 717 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 713 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022653 [exp] 644 / 0 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 614 / 0 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 550 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 447 / 2e-152 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 437 / 3e-147 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 430 / 5e-145 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106200 [exp] 833 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 820 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 749 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 743 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 611 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 595 / 0 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 592 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 538 / 0 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 428 / 2e-144 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 424 / 9e-143 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10041845 pacid=23146674 polypeptide=Lus10041845 locus=Lus10041845.g ID=Lus10041845.BGIv1.0 annot-version=v1.0 ATGGCAATCGAGGAGGATTTGGAGAGCTGCGGAAGCAGAGCGGCCGACTCCTTCTCCCTCGCTAATCCTCGGCACCACAGGCAGAAGCTGGAGGTCTATA ACGAGGTCCTCAGGAGAATTCAGGATTCCGGCCACGAAGACGCCAATCTTCCTGGCTTTGACGATCAGCTCTGGCTTCATTTCAATCGCTTACCTGCTCG ATATGCTCTAGACGTGAATGTTGAGAGGGCAGAGGACGTGCTTACTCACAAGAGGCTGTTGCAATTGGCAGAAGATCCTGCTAATCGACTTGCATTTGAA GTTCGTTTGGTGCAGGTCTATCCACTCTCGAATGGAAAAGCTCTTGATTCCTCACATTTAGATTCTTCCCTGAAAGAAGACGCTCAGAGTTCTTTTGTCT CAAGTAAACATGTCACCCATCCTCCTCCAACATTTGGTTCATCATCTAATCTTGAAGTGCTCACACATAGATATCATGTTGCAGATGGAGATTCTGCTGC AAATTCAACATCAATTGATGCCAGGCCCATGCATGAGATCACATTTTCTACTGTAGACAGACCCAAACTCCTTAGTCAGTTGACTTCCTTGCTTGCTGAA ATTGGATTGAATATACAAGAAGCCCACGCCTTTTCTACCGTTGATGGGTTTTCACTTGACGTTTTTGTTGTTGATGGTTGGCCTCATGAGGAGACCGAGG AACTTAGACATGCTTTGGAGAAGGAAATTCTGAATTCAAAGGTAGTCGCTAAAATAAGACCTTATTCCGCAGTTACCATTTCTGAACAGCAGTACCCTAA ACAGCCTTGTATTTCTGCTATCAACGTTGTCAATAACACAAGGGTTGTGCCTCTTCCTGGTTGCATAGAGATACCATGTGATGGAACTGATGTCTGGGAA ATTGATAACAGTCAGCTAAGAATTGAAAACAAAGTAGCATCCGGAGCATATGGTGATCTATACAAAGGCACGTATTGCAGTCAGGAAGTAGCTGTTAAAG TCCTAAAGCCAGAGCGCGTCAGTGCGGAAATGCTTAGAGAGTTTTCGCAGGAAGTTTATATAATGAGAAAAGTTCGGCATAAGAATGTTGTGCAATTCAT AGGAGCATGTACTCAACCTCCAAATTTGTGTATTGTGACAGAATTCATGGCAAGAGGAAGTATATATGATTTTCTGCATAAGCACGATGGTGTCTTCAAA CTCCCATCCTTAATCAGAGTTGCAATAGACGTGTCAAAGGGAATGAATTATCTCCACCAGAATAGTATAATTCACAGAGATCTGAAGACAGCTAATCTTC TGATGGATGAAAATGAAGTAGTTAAGGTTGCTGATTTTGGGGTAGCCAGAGTACAGACGCAATCTGGAGTGATTGAACACAAACCATATGATCACAAGGC AGACATTTTCAGTTTTGGGATAGTGATGTGGGAGCTTTTGACCGGAGAGCTTCCTTACTCATACCTAACCCCATTGCAAGCAGCAGTTGGCGTGGTGCAA AAGGGTTTGCGTCCTACAATTCCGAAAGAGACTCAACCTAAACTTGCGGAACTACTTGATAGATGCTGGAGACAGGACCCAACAGAAAGGCCTGACTTCT GTGAAATCATAGATATTCTTCAGCAAATCGCCAAAGAGGTTGGAGATGGGAAGGAAGGTCGTCGCAAGGATCGAACCGCCGGTGGGTTTTTCTCATCGTT CAAGAGAGGCCACCATTAG
AA sequence Show only first row Show all	>Lus10041845 pacid=23146674 polypeptide=Lus10041845 locus=Lus10041845.g ID=Lus10041845.BGIv1.0 annot-version=v1.0 MAIEEDLESCGSRAADSFSLANPRHHRQKLEVYNEVLRRIQDSGHEDANLPGFDDQLWLHFNRLPARYALDVNVERAEDVLTHKRLLQLAEDPANRLAFE VRLVQVYPLSNGKALDSSHLDSSLKEDAQSSFVSSKHVTHPPPTFGSSSNLEVLTHRYHVADGDSAANSTSIDARPMHEITFSTVDRPKLLSQLTSLLAE IGLNIQEAHAFSTVDGFSLDVFVVDGWPHEETEELRHALEKEILNSKVVAKIRPYSAVTISEQQYPKQPCISAINVVNNTRVVPLPGCIEIPCDGTDVWE IDNSQLRIENKVASGAYGDLYKGTYCSQEVAVKVLKPERVSAEMLREFSQEVYIMRKVRHKNVVQFIGACTQPPNLCIVTEFMARGSIYDFLHKHDGVFK LPSLIRVAIDVSKGMNYLHQNSIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVIEHKPYDHKADIFSFGIVMWELLTGELPYSYLTPLQAAVGVVQ KGLRPTIPKETQPKLAELLDRCWRQDPTERPDFCEIIDILQQIAKEVGDGKEGRRKDRTAGGFFSSFKRGHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	6.0	0.9333
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	6.3	0.9429
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	9.9	0.9490
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10017009 [exp]	10.5	0.9023
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	14.0	0.9444
AT5G20660			Zn-dependent exopeptidases sup...		Lus10037997 [exp]	15.9	0.9375
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	18.4	0.9434
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001167 [exp]	18.7	0.8926
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034307 [exp]	21.3	0.9020
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	21.4	0.8843

Compare expression of checked genes

Lus10041845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.