Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35783 57 / 5e-13 RTFL6, DVL17 DEVIL 17, ROTUNDIFOLIA like 6 (.1) AT2G29125 47 / 3e-08 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 (.1) AT1G68825 44 / 5e-08 DVL5, RTFL15 DEVIL 5, ROTUNDIFOLIA like 15 (.1.2) AT3G46613 44 / 3e-07 RTFL4, DVL15 DEVIL 15, ROTUNDIFOLIA like 4 (.1) AT5G59510 44 / 4e-07 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 (.1) AT3G55515 43 / 4e-07 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT1G67265 41 / 8e-07 DVL3, RTFL21 DEVIL 3, ROTUNDIFOLIA like 21 (.1) AT1G07490 42 / 1e-06 RTFL3, DVL9 DEVIL 9, ROTUNDIFOLIA like 3 (.1) AT3G25717 41 / 1e-06 RTFL16, DVL6 DEVIL 6, ROTUNDIFOLIA like 16 (.1) AT1G13245 41 / 1e-06 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028393 [exp] 85 / 1e-23 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10002705 [exp] 47 / 1e-08 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10034272 [exp] 44 / 8e-08 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10023399 [exp] 45 / 1e-07 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10040784 [exp] 45 / 1e-07 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10041491 [exp] 44 / 2e-07 AT1G13245 66 / 1e-16 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10001569 [exp] 44 / 3e-07 AT5G59510 79 / 8e-20 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10021966 [exp] 41 / 2e-06 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10026526 [exp] 40 / 4e-06 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226250 [exp] 49 / 2e-09 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.008G035900 [exp] 48 / 2e-09 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.001G242800 [exp] 48 / 4e-09 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.009G034300 [exp] 47 / 2e-08 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.010G201700 [exp] 44 / 1e-07 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G057800 [exp] 44 / 1e-07 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.010G129600 [exp] 42 / 4e-07 AT1G13245 75 / 1e-20 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.008G116700 [exp] 42 / 4e-07 AT1G13245 76 / 6e-21 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.004G102950 [exp] 41 / 9e-07 AT1G67265 64 / 4e-16 DEVIL 3, ROTUNDIFOLIA like 21 (.1) Potri.014G138900 [exp] 41 / 1e-06 AT3G63088 56 / 7e-13 DEVIL 14, ROTUNDIFOLIA like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10041846 pacid=23146780 polypeptide=Lus10041846 locus=Lus10041846.g ID=Lus10041846.BGIv1.0 annot-version=v1.0 ATGTTGGTGGGTAGATGTCTGACTCGGCAAGGGAGCCAAAGGGTCGTCGTCGTCGGCGAAGTTGACGGTGGCTCCGGCGGCGTTCGTCATCAACAACAAC CAGCAGGTTGCATGGGATCGGTGAGGGAGCAGCGTTCAAGGTTTTATGTTGCGAGGAGATGCGTGGTTATGCTTCTTTGTTGGCACAAATACGGGAAGTC TTAG
AA sequence Show only first row Show all	>Lus10041846 pacid=23146780 polypeptide=Lus10041846 locus=Lus10041846.g ID=Lus10041846.BGIv1.0 annot-version=v1.0 MLVGRCLTRQGSQRVVVVGEVDGGSGGVRHQQQPAGCMGSVREQRSRFYVARRCVVMLLCWHKYGKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10041846 [exp]	0	1
					Lus10012304 [exp]	8.1	0.8938
AT5G27730			Protein of unknown function (D...		Lus10022615 [exp]	14.0	0.8904
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000582 [exp]	16.0	0.8871
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	45.2	0.8471
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	46.7	0.8369
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	50.3	0.8428
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	58.6	0.8404
AT1G34270			Exostosin family protein (.1)		Lus10033734 [exp]	67.1	0.8083
					Lus10029735 [exp]	70.0	0.8285
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042918 [exp]	71.2	0.7870

Compare expression of checked genes

Lus10041846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.