Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 430 / 3e-149 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24300 92 / 2e-20 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 85 / 7e-18 AMT1;5 ammonium transporter 1;5 (.1) AT1G64780 84 / 2e-17 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 75 / 1e-14 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT4G28700 68 / 2e-12 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028397 [exp] 728 / 0 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 476 / 3e-167 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 476 / 6e-167 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 474 / 9e-167 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 474 / 1e-166 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 474 / 2e-166 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 474 / 2e-166 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 456 / 2e-158 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 441 / 4e-153 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106000 [exp] 568 / 0 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 476 / 2e-167 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 466 / 2e-163 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 456 / 2e-159 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 456 / 3e-159 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 433 / 3e-150 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 426 / 2e-147 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 424 / 1e-146 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 411 / 2e-141 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023012 [exp] 410 / 4e-141 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10041851 pacid=23146835 polypeptide=Lus10041851 locus=Lus10041851.g ID=Lus10041851.BGIv1.0 annot-version=v1.0 ATGAATAACTCGGACTATATAAACATACCACCTCTGCCCTCTAGCTTAGTCCCCGACGAGGGCTCCCCCGACTGGCTCAACAAAGGCGACAATGCGTGGC AGCTCATCGCGACCAATCTGGTCTGCATCCAGAGCGTTCCGGGGCTTGTCATTCTCTACGGTAGCGTGGTCAAGAAGAAATGGGCGGTCAACTCGGCCTT CATGGCCCTCTACGCCTTTGCTGCCGTGCTCCTCTGCTGGGTATTGTGGGCTCATCACATGGCGTTCGGAAGTTTGGGGAAGAGTCCCTTGATTGCGAAT CCGGCCTTCGTAGCCACCGGAAGTTTCCTTCTCGAAAGGTCGAAGCTTGGATTTGTTCCTATGGCCGACTTTGTGTTTTACCAGTTTGCTTTTGCTGCAA TCACTGTCATACTTCTGGCCGGTTCCTTGCTCGGAAGGATGAATTTCTATGCTTGGATGCTGTTCGTGCCTCTGTGGCTCACCTTCAGCTATACCGTTGG AGCTTATGCCATCTGGGGAGGAGGGTTCCTTGAAGATTGCATTATTGATTATGCTGGTGGCTTTGTGATTCACCTCTCCTCTGGCGTAGCTGGTTTCACC GCTGCATATTGGGTAGGCCCACGGCATGCTCAGGACAGGCAGCATTTTCCGCCGAACAACATAATTCACATGCTGGGAGGAGCAGGGTTCCTGTGGCTGG GATGGACAGGCTTCAATGGTGGATCACCATTCGCGGCAGGATTAATTGCTTCACTTGCCATTTTCAACACCCATCTCTCAACTGCCACCAGCATCTTGAT CTGGATTTCCCTCGACATGATTGTCTACAAGAAGAGCTCGGTTGTCGGAGCTGTCCAGGGGATGATGACTGGACTTGTCTGCATCACACCTGGTGCGGGA ATAGTCGACCCGTGGACTGCTGTGTTGATGGGGGTGCTGTCAGGTTCATTTCCATGGTACACAATGATGGTATTGCATAAAAGATGGACCTTCTTCCAGA CTGTAGATGACACACTTGCCGTGTTCCATACACACGCTGTGGCAGGTGTCATGGGAGGTGTCCTTTCTGGTCTCTTTGCCAAGCCGAAACTCCTCAGGAT TGTGCGCCCAAGCAGCACGTACGGATGCTGA
AA sequence Show only first row Show all	>Lus10041851 pacid=23146835 polypeptide=Lus10041851 locus=Lus10041851.g ID=Lus10041851.BGIv1.0 annot-version=v1.0 MNNSDYINIPPLPSSLVPDEGSPDWLNKGDNAWQLIATNLVCIQSVPGLVILYGSVVKKKWAVNSAFMALYAFAAVLLCWVLWAHHMAFGSLGKSPLIAN PAFVATGSFLLERSKLGFVPMADFVFYQFAFAAITVILLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAYAIWGGGFLEDCIIDYAGGFVIHLSSGVAGFT AAYWVGPRHAQDRQHFPPNNIIHMLGGAGFLWLGWTGFNGGSPFAAGLIASLAIFNTHLSTATSILIWISLDMIVYKKSSVVGAVQGMMTGLVCITPGAG IVDPWTAVLMGVLSGSFPWYTMMVLHKRWTFFQTVDDTLAVFHTHAVAGVMGGVLSGLFAKPKLLRIVRPSSTYGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	1.4	0.9275
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	1.4	0.9182
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	1.7	0.8805
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	2.0	0.8803
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	4.2	0.8354
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	4.5	0.8323
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	4.9	0.8368
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	6.0	0.8278
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	6.8	0.7901
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	7.5	0.8220

Compare expression of checked genes

Lus10041851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.