Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66055 444 / 6e-154 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 180 / 5e-53 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G14255 74 / 9e-14 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G25600 68 / 8e-12 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G19150 64 / 3e-11 Ankyrin repeat family protein (.1.2) AT4G27780 64 / 6e-11 ACBP2 acyl-CoA binding protein 2 (.1) AT4G32500 65 / 7e-11 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G03430 62 / 9e-11 Ankyrin repeat family protein (.1) AT5G20350 63 / 2e-10 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G53470 62 / 3e-10 ACBP1 acyl-CoA binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028399 [exp] 707 / 0 AT5G66055 398 / 3e-135 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10014522 [exp] 181 / 9e-53 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 158 / 2e-44 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10001799 [exp] 84 / 1e-16 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 77 / 9e-15 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10001414 [exp] 67 / 4e-12 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10038108 [exp] 67 / 2e-11 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10008329 [exp] 66 / 5e-11 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10020505 [exp] 64 / 7e-11 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G060400 [exp] 471 / 1e-164 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.005G105800 [exp] 459 / 8e-160 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.001G295200 [exp] 172 / 8e-50 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.003G163200 [exp] 78 / 4e-15 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.003G103400 [exp] 72 / 5e-14 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 72 / 6e-14 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.013G042300 [exp] 69 / 3e-12 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.001G066800 [exp] 68 / 6e-12 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.005G054800 [exp] 65 / 3e-11 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G161300 [exp] 62 / 9e-11 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10041853 pacid=23147022 polypeptide=Lus10041853 locus=Lus10041853.g ID=Lus10041853.BGIv1.0 annot-version=v1.0 ATGGCGGCACCACGAGCACCTCCGAACTTGCGCTCACCTTTGCTCTTCCCCATTCCTCTCAGCTTCTACTCAATTCGAAAAATCAAATTCCCTAGAAGGT TCCGCTCATTCTCGTCTTCCTTCCAATCCTCTCCTCTCATCACGGACGACGATCATGCCATCGGGGACTGTCTCGTCTTCGAAGAAGGCGTATTCGAGGA TCCCTATCTCGACGACGATACCAATTCCGTTCCCGATCCCCCGCCATCGGCCAAGATCTCCCGCAAGAAAAAGAAGGCGGAGGTCCAGTGGGAGAACTTG GTCCCTGACGAGTGGATAGAAGCGCAGGCGGAAATGAACATTAACAAGAAGGAGAGGCGCAGAATTGCGCAGGAGATGCAGCAGAATAGCCGGTTGGAGA GGAAGACCAGAGGTTTGACACCTATTCGGAACGTTAATTTGGAGGATTATGAGGCCTTCCGTGAGGCCAAGCGTGCTCAGTTGAAGCCGCTGGTTCAAAC TGACGATAACGACGAAGAAGAGGAAGAAGAAGAAGAAGAAGGTTTGGATGAGGAAGGGTTTTACGACAGCGACGAGGATGAGGAAGGATTTGTTAATAGG AAGATTGAGCGAGTTGCGCCTAAGAATCCGAGGTGGGCGGTTTACGGCAAGGGTTTTGAGCATGTTAATGAGTTCTTCAGGAATGGCAAGTACAACCCTG AAGATAAGGATTCAGACGGCCGCCGGAAGTTGTTCACCAAAGAGGAAAAGGTTTTCCTCAACAGACGGATCCCTGATGTATCAGCTGCTACCTGTGTCAA ATGGCAACCTGTTCACACACTTGCAGCATCTGGAGATTTCTATCTTATGAACATTTTACTGAAACATAACCTTGACATCAATTCTGTAGATGCAGAGGGT ATGAGTGCTCTCCACAAAGCCATAATTGGTAAAAAGCAGGCAATCACCAGCTATCTATTGAGAGAATCAGCAAATCCCTTCATACGAGATACAGATGGCG CTACCTTGATGCATTATGCTGTTCGGACAGCATCCATTCCGGCAATCAAACTACTTCTCCTATATAACGTTGACATAAATCTTCAGGACAATGATGGTTG GTCCCCTTTGCACCTTGCCGTTCAAGCTCTAAGGACAGACATTGTGAAACTCTTACTCATAAAAGGAGCTGATAAGACCTTAACCAACAAGGACGGTTTA ACCCCGCTGGAGCTCTGCCTTCATCTCGGACGAAACTCCAGGACTCTTGAGCTGATCAAGATGTTGAAGCTGTATCCAAGGAAGTCCACTCCTGCTGCTG CTGCTTTGGCTAGAAAACCCAGCTCTGAACTGCCAAAATTAGTACCCGAACATCGTCATTTCTTCAGCTCCGGATAA
AA sequence Show only first row Show all	>Lus10041853 pacid=23147022 polypeptide=Lus10041853 locus=Lus10041853.g ID=Lus10041853.BGIv1.0 annot-version=v1.0 MAAPRAPPNLRSPLLFPIPLSFYSIRKIKFPRRFRSFSSSFQSSPLITDDDHAIGDCLVFEEGVFEDPYLDDDTNSVPDPPPSAKISRKKKKAEVQWENL VPDEWIEAQAEMNINKKERRRIAQEMQQNSRLERKTRGLTPIRNVNLEDYEAFREAKRAQLKPLVQTDDNDEEEEEEEEEGLDEEGFYDSDEDEEGFVNR KIERVAPKNPRWAVYGKGFEHVNEFFRNGKYNPEDKDSDGRRKLFTKEEKVFLNRRIPDVSAATCVKWQPVHTLAASGDFYLMNILLKHNLDINSVDAEG MSALHKAIIGKKQAITSYLLRESANPFIRDTDGATLMHYAVRTASIPAIKLLLLYNVDINLQDNDGWSPLHLAVQALRTDIVKLLLIKGADKTLTNKDGL TPLELCLHLGRNSRTLELIKMLKLYPRKSTPAAAALARKPSSELPKLVPEHRHFFSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10041853 [exp]	0	1
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	7.3	0.8529
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	9.3	0.8752
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	11.5	0.8081
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	11.8	0.8683
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	13.0	0.8354
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	14.8	0.8555
AT2G23390			unknown protein		Lus10038137 [exp]	15.0	0.8569
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	16.3	0.8606
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003515 [exp]	19.3	0.7847
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	20.0	0.8252

Compare expression of checked genes

Lus10041853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.