Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 151 / 4e-45 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 116 / 5e-33 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G60650 59 / 3e-10 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT5G04280 55 / 1e-08 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT3G46020 51 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 53 / 5e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G06210 51 / 5e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 53 / 6e-08 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G73530 51 / 9e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 51 / 3e-07 nucleotide binding;nucleic acid binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028400 [exp] 176 / 2e-55 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10017507 [exp] 121 / 6e-34 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10018202 [exp] 127 / 1e-33 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040705 [exp] 125 / 1e-33 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028776 [exp] 109 / 4e-29 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10018277 [exp] 64 / 2e-11 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 64 / 3e-11 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040854 [exp] 57 / 2e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 57 / 3e-09 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105700 [exp] 173 / 7e-54 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.003G130301 [exp] 131 / 7e-38 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.009G041700 [exp] 122 / 1e-32 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 120 / 4e-32 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G101500 [exp] 101 / 1e-26 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.003G149600 [exp] 56 / 5e-09 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.008G033000 [exp] 54 / 1e-08 AT1G60650 172 / 3e-52 AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Potri.015G086500 [exp] 54 / 2e-08 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 53 / 3e-08 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.011G130300 [exp] 52 / 3e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041854 pacid=23147015 polypeptide=Lus10041854 locus=Lus10041854.g ID=Lus10041854.BGIv1.0 annot-version=v1.0 ATGGAGCGACCAAGGCGCAGATCGCCCTCTCGCAGTCGTGGCAGGACCGAGGCTGTTAATCCTGGAGATACTCTCTATGTGACTGGGTTATCTACAAGGG TAACTGAAAGGGAACTAGAAGACCATTTTTCGAAGGAGGGAAAGGTTGCGGCCTGTCATCTTGTTGTGGAGCCCCGTACTCGCATTTCTCGTGGGTTTGC TTTTGTGACAATGGAGAATGTTGATGGTGCAGATCGTTGCGTTAAGTATCTCAACCAGTCGGTTCTGGAGGGACGATATATAACTGTGGAAAAGTCTCGA AGGAAACGACCAAGGACTCCAACTCCAGGGCATTATCTTGGTCTAAAGAGCACAAGGGATGATGGGCATCATGATTGCGATCGTGACCGTAGTAGATACC GTGGTAGTGGTGGGAGCAGTGGTTATGACGACTACCGTAGGTCACCGAGGCATGACGAGTACCGCAGGTCTCCAAGGCGGTCCCCGTACAGAGGTGGCCG CGAGTATTCTCCTCCGAGGCATTCTCCCTACGGTGGCGGGAGGTCAGTGGCTATGACGACTTCCGTAGGTCACCGAGGCATGATGAGTACCGCAGGTCTC CAAGGCGGTCCCCGTACAGAGGTGGCCGCGAGTATTCTCCTCCGAGGCACTCTCCTTACGGTGGTGGGAGGTCGAGGAGGTACCGGTCCAGGTCTCCTTA AACTCCGTACCTGTCTCGAACGATGTTTGTAA
AA sequence Show only first row Show all	>Lus10041854 pacid=23147015 polypeptide=Lus10041854 locus=Lus10041854.g ID=Lus10041854.BGIv1.0 annot-version=v1.0 MERPRRRSPSRSRGRTEAVNPGDTLYVTGLSTRVTERELEDHFSKEGKVAACHLVVEPRTRISRGFAFVTMENVDGADRCVKYLNQSVLEGRYITVEKSR RKRPRTPTPGHYLGLKSTRDDGHHDCDRDRSRYRGSGGSSGYDDYRRSPRHDEYRRSPRRSPYRGGREYSPPRHSPYGGGRSVAMTTSVGHRGMMSTAGL QGGPRTEVAASILLRGTLLTVVGGRGGTGPGLLKLRTCLERCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	2.4	0.9188
					Lus10014678 [exp]	8.1	0.9035
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	9.6	0.8599
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	9.6	0.9071
					Lus10042562 [exp]	9.9	0.8800
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	10.2	0.8674
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	11.4	0.8772
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	13.9	0.8846
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	14.4	0.8359
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	15.4	0.8659

Compare expression of checked genes

Lus10041854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.