Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1263 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 896 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11840 875 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 869 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G00240 866 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 851 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 701 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 681 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 658 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 497 / 2e-164 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028401 [exp] 1344 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 1103 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 1101 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 1068 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 975 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 884 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 874 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 838 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 835 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105600 [exp] 1287 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 1284 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 1185 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1152 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 1107 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 892 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 885 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 865 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.018G131200 [exp] 701 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.003G032800 [exp] 696 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10041855 pacid=23146861 polypeptide=Lus10041855 locus=Lus10041855.g ID=Lus10041855.BGIv1.0 annot-version=v1.0 ATGGCCGGCGACGATTCCGCCAGCCCTAGGGTCATCTACCTCCACGGCGACCTCGAACTCCACATCATCGAAGCCCGGCGGCTCCCCAACATGGACTTAG CCTCCGAGCGCCTCCGCCGCTGCTTCGCCCCTTGCAACTTCTGCGCCGCTCCTCCCGCCACATCCGACGCCGAAAACGGAGGAGGAGAACCCCGCGACTC CAAACTTCACGAGCACAGGAACATCATCACTACCGACTCCTACGTCACTGTCGTCGTCCCTCAAGCCACCGTCGCCCGCACTCACGTCGTCAAGAACTCC CAAAACCCTAGGTGGGACTACCGCTTCTTCATCCAACTCGCGCATCCTATGGCCGAGCTCGAATTCCACGTCAAGGACGACGACGTATTCGGCGCTCAGT GCGTCGGGATCGCTAGGATCCCCGCCGAGAAGATCGCCACTGGGGAAGTTATCAGCGGCTGGTTCCCGATTCTCGGGTCCAACGGCAAGCCGGCTAAGCC GGACACGGCGTTGAGGCTCGAGATGAAGTTTATCGCTGTTGAGAAGAATCCGGTCTACAAACACGGCATTGCCGGTGATCCTGACCATGGTGGCGTCAGA CAGGCTTACTTCCCTTTGAGGAAAGCGAGTATGGTTACGCTGTATCAGGATGCTCATGTTCCTGATAACATGTTGCCGGAGATTCCAATTGACGGCGGCA AGGTTTATAAGCAGCCTAAGTGCTGGGAGGACATTTGCTATGCCATCTCCGAGGCTCACCATATGATCTACATTGTGGGATGGTCTGTTTTCCATAAGAT TAAGCTGGTTAGAGAGCCCACTAGGCCATTGCCCAGAGGAGGGGATCTCACTCTTGGTGAGTTGCTCAAGTATAAATCCGAAGAAGGTGTGAGGGTTCTG TTGCTGGTTTGGGATGACAAAACCTCCCATGATAAATTCTTCCTCTCTACGGCGGGGGTGATGGCGACTCATGATGAAGAGACGCGAAAGTTTTTCAAGC ATTCTTCAGTTATCTGTGTCTTGTCTCCTCGATATGCCAGCAGCAAGCTTAGTGTTGTGAAACAACATGTCGTTGGAAGTGTCTTCACACATCATCAAAA ATGTGTTATTGTGGACACACAGGCTTCTGGTAACAACAGGAAGCTAACTGCATTTGTTGGAGGTCTTGATCTGTGTGATGGGCGATATGACACCCCTGGG CATCGTCTGTTTCATGATCTTGATACTTGCTTCAAGGATGATTTCCACAATCCTACCTTTGCTGCTGGGACAAATGCACCTAGGCAGCCATGGCACGATT TGCATTCTAGGATTGATGGGCCTGCTGCATACGATGTTCTTATAAACTTTGAGCAGCGTTGGAGGAAAGCAACAAAGTGGAGGGAGTTTGGACTTCGTTT AAAAAAAAAGATGTCACATTGGAACGATGATGCTCTTATAAAGGTAGAAAGAATCTCATGGATAGTAAGTCCTGCTCTTCAAGTAACAAAAGAAGGTATG ACAATAATTCCTCAAGATGATCCCATAGTACACGTCTGTCGTGAAGATGATCCTGAAAACTGGCATGTTCAGATTTTCCGGTCTATAGACTCTGGATCCT TGAAGGGCTTTCCTAAGACTATTGGTAAATGTCAGCAAATGAATCTCACTTGTTCAAAAAAGCTGGTGATAGATAAAAGCATACAGACAGCATATATCCA GGCAATCAGATCTGCACAACATTTCATATACATTGAGAATCAGTATTTTCTCGGATCATCGTATGGCTGGCCTTCATACCAAAATGCAGGAGCTGATAAC CTAATACCAATGGAGCTGGCATTGAAGATTGCCGAGAAAATTAGAGCCCGCGAAAGATTTGCGGTGTATGTTGTTGTGCCAATGTGGCCTGAAGGAGACC CAAAGTCTGAAGTTGTGCAAGAGATTCTGTTCTGGCAGAGCCAGACCATTAGCATGATGTACAATGTAGTGGCGAATGAACTAAAGTCTATGCAACTTCA GGAAAACCCTCAAGACTACCTCAATTTCTATTGCATTGGTAAGACCGAGGAAGCTCCGCCGGAAATGTTGAATGGTACTAATGGTCAACAGGTCTGCGAA GCCACAAGACATCAACGCTTCATGATTTACGTTCATGCAAAGGGCATGGTGGTAGACGATGAGTATGTAATCATAGGATCGGCCAATATCAACCAAAGAT CCATGGCCGGCACCAAAGACACCGAGATTGCCATGGGTGCATATCAACCACATCATGCTTGGGCTGTGAAGAAAAGACATCCTCGTGGCCAGATCTACGG ATACAGAATGTCTCTATGGGCGGAGCATCTCGGTGGATTACAGGAGACATACGAAGATCCAGAAAGCTTGGAATGCGTGAGAACGGTAAATAACATTGCT GAAGAGAACTGGAAGAGATTCTCAGCTCCCAGTTTTGAAAAATTGCAGGGACATCTGCTCAAGTATCCATACCAAGTTGACATGGATGGGGTGGTAACTT CACTCTCAGGAAGTGAGACCTTCCCCGATGTCGGTGGCAGTGTTGTCGGAGCTCATTCGATTAAGATCCCCGACATCCTAACAACATGA
AA sequence Show only first row Show all	>Lus10041855 pacid=23146861 polypeptide=Lus10041855 locus=Lus10041855.g ID=Lus10041855.BGIv1.0 annot-version=v1.0 MAGDDSASPRVIYLHGDLELHIIEARRLPNMDLASERLRRCFAPCNFCAAPPATSDAENGGGEPRDSKLHEHRNIITTDSYVTVVVPQATVARTHVVKNS QNPRWDYRFFIQLAHPMAELEFHVKDDDVFGAQCVGIARIPAEKIATGEVISGWFPILGSNGKPAKPDTALRLEMKFIAVEKNPVYKHGIAGDPDHGGVR QAYFPLRKASMVTLYQDAHVPDNMLPEIPIDGGKVYKQPKCWEDICYAISEAHHMIYIVGWSVFHKIKLVREPTRPLPRGGDLTLGELLKYKSEEGVRVL LLVWDDKTSHDKFFLSTAGVMATHDEETRKFFKHSSVICVLSPRYASSKLSVVKQHVVGSVFTHHQKCVIVDTQASGNNRKLTAFVGGLDLCDGRYDTPG HRLFHDLDTCFKDDFHNPTFAAGTNAPRQPWHDLHSRIDGPAAYDVLINFEQRWRKATKWREFGLRLKKKMSHWNDDALIKVERISWIVSPALQVTKEGM TIIPQDDPIVHVCREDDPENWHVQIFRSIDSGSLKGFPKTIGKCQQMNLTCSKKLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYGWPSYQNAGADN LIPMELALKIAEKIRARERFAVYVVVPMWPEGDPKSEVVQEILFWQSQTISMMYNVVANELKSMQLQENPQDYLNFYCIGKTEEAPPEMLNGTNGQQVCE ATRHQRFMIYVHAKGMVVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHHAWAVKKRHPRGQIYGYRMSLWAEHLGGLQETYEDPESLECVRTVNNIA EENWKRFSAPSFEKLQGHLLKYPYQVDMDGVVTSLSGSETFPDVGGSVVGAHSIKIPDILTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	2.0	0.8760
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	2.0	0.8872
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	2.4	0.8612
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	2.8	0.8474
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	4.5	0.8594
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	5.0	0.8541
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	5.2	0.8464
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	8.9	0.8428
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	9.2	0.8375
AT2G40820			unknown protein		Lus10038998 [exp]	10.2	0.8510

Compare expression of checked genes

Lus10041855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.