Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66060 450 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G20270 408 / 6e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17720 393 / 7e-139 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 373 / 6e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 240 / 2e-78 Oxoglutarate/iron-dependent oxygenase (.1.2) AT5G18900 239 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 238 / 7e-78 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT3G28490 231 / 3e-75 Oxoglutarate/iron-dependent oxygenase (.1) AT4G35820 228 / 4e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G43080 226 / 5e-73 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028404 [exp] 532 / 0 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 380 / 4e-133 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 370 / 8e-129 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032183 [exp] 260 / 4e-86 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 248 / 2e-81 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 247 / 3e-81 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014502 [exp] 234 / 3e-76 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10031048 [exp] 229 / 9e-75 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10035434 [exp] 189 / 5e-57 AT2G43080 365 / 4e-125 P4H isoform 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108000 [exp] 429 / 4e-153 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G060800 [exp] 416 / 1e-147 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 395 / 1e-139 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G197700 [exp] 253 / 2e-83 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075100 [exp] 248 / 1e-81 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 243 / 3e-80 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.002G232100 [exp] 229 / 2e-74 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.002G016700 [exp] 207 / 7e-67 AT1G20270 229 / 5e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 188 / 2e-58 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G052600 [exp] 181 / 1e-55 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10041857 pacid=23146733 polypeptide=Lus10041857 locus=Lus10041857.g ID=Lus10041857.BGIv1.0 annot-version=v1.0 ATGGCGAAAGCCAGATACTCCCGGTTTCCGTCTCGGAAATCCAGCTCATCCACCATGATTTTCACCATGCTCCTCATGTTCACCTTCGTCATTCTCATTC TCCTCGCCCTCGGTATTCTCTCCATCCCAAGCAATTCCGTCGGCTCCAGGAAAGCTCACGATCTCAGCACGATTCTCCACAATCAAGACTATAGCGGCGG CGACGATGGTCAAGCCGAGCCTTGGGTTGAAGTCATCTCCTGGGAGCCTCGTGCATTCGTCTATCACAATTTCCTTAGCAAGGAGGAGTGTGAGTACTTG ATCAGTCTTGCCAAGCCTCATATGGTTAAGTCCACAGTTGTTGATTCTGAGACCGGAAAAAGCAAAGATAGTAGAGTTCGGACAAGCTCCGGAACATTCT TAGCTCGAGGCAGGGACAAAATCGTTCGAGATATTGAGCAAAGGATTGCTGATTTCTCATTCATACCCGTAGACCATGGGGAAGGGCTTCAAGTCCTCCA CTATGAAGTGGGGCAGAAATATGAGCCTCACTATGACTACTTCATGGACGACTACAATACCAAGAATGGGGGCCAACGCATAGCTACTGTTCTCATGTAC CTGTCAGATGTTGAAGAAGGCGGTGAGACAGTTTTCCCTTCAGCAAAAGGGAACTATAGCGCCGTCCCATGGTGGAACGAATTATCAGAATGTGGGAAGA AAGGACTATCAGTGAAACCTAAGATGGGTGATGCGTTACTTTTCTGGAGCATGAAACCTGATGCTAGCCTGGACCCTTCAAGTTTGCATGGTGGTTGCGC TGTGATTAAAGGGAACAAGTGGTCATCTACGAAATGGATGCGAGTGAACGAGTATAAGGTTTGA
AA sequence Show only first row Show all	>Lus10041857 pacid=23146733 polypeptide=Lus10041857 locus=Lus10041857.g ID=Lus10041857.BGIv1.0 annot-version=v1.0 MAKARYSRFPSRKSSSSTMIFTMLLMFTFVILILLALGILSIPSNSVGSRKAHDLSTILHNQDYSGGDDGQAEPWVEVISWEPRAFVYHNFLSKEECEYL ISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLARGRDKIVRDIEQRIADFSFIPVDHGEGLQVLHYEVGQKYEPHYDYFMDDYNTKNGGQRIATVLMY LSDVEEGGETVFPSAKGNYSAVPWWNELSECGKKGLSVKPKMGDALLFWSMKPDASLDPSSLHGGCAVIKGNKWSSTKWMRVNEYKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	0	1
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	1.7	0.9246
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	2.4	0.9036
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	4.2	0.8940
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	4.2	0.9103
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	4.7	0.9220
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	5.7	0.9051
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	8.7	0.8777
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	8.9	0.9041
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	10.8	0.8486
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	11.3	0.8626

Compare expression of checked genes

Lus10041857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.