Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35830 1655 / 0 ACO1 aconitase 1 (.1.2) AT2G05710 1608 / 0 ACO3 aconitase 3 (.1) AT4G26970 1468 / 0 ACO2 aconitase 2 (.1) AT5G54950 92 / 1e-22 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028405 [exp] 1800 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10015116 [exp] 1581 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1575 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1570 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1569 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 1495 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1415 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108100 [exp] 1659 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.007G060900 [exp] 1645 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.014G153400 [exp] 1583 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1571 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.015G130201 [exp] 134 / 9e-37 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10041858 pacid=23147077 polypeptide=Lus10041858 locus=Lus10041858.g ID=Lus10041858.BGIv1.0 annot-version=v1.0 ATGGTGAGCGAAAATCCTTTCAATCGCATCCTCAAGACACTCGAGAAGCCCGATGGTGGTGAATTCGGACAGTACTACAGCTTGCCCGCTCTCGATGATC CCAGAGTCGAGAAGCTGCCGTACTCAATTAGGATCCTTCTGGAATCAGCCATTCGAAACTGTGATGAGTTCCAGGTTAAGAGTAATGATGTGGAGAAGAT CATTGACTGGGAGAACAGTGCTCCTAAACTTGTTGAAATACCCTTCAAGCCTGCTAGAGTACTCCTCCAGGATTTCACTGGTGTTCCTGCTGTTGTTGAT CTTGCTTGTATGCGCGATGCTATGAACAAACTGGGAGGCGATTCTAATAAGATTAACCCATTGGTTCCAGTTGATCTCGTCATTGATCATTCAGTTCAGG TGGATGTGGCAAGGTCGGAAAATGCAGTGCAGTTAAATATGGAACTTGAGTTCCAAAGAAACAATGAAAGATTTGCTTTTCTTAAATGGGGTTCAAATGC ATTTGACAACATGCTTGTTGTTCCTCCAGGATCTGGTATTGTCCACCAGGTCAACTTGGAATACCTTGGGAGAGTTGTATTCAACACCAAAGGCTTGCTG TACCCTGATAGCGTTGTTGGAACAGATTCACACACAACTATGATTGATGGTCTGGGTGTTGCTGGTTGGGGAGTTGGTGGAATTGAAGCAGAGGCTGCAA TGCTTGGCCAGCCTATGAGCATGGTCCTCCCTGGTGTTGTCGGATTCAAGCTGTCAGGAAAGCTGAGAAATGGTGTCACAGCTACCGACTTGGTTCTGAC AGTAACTCAGATGCTACGGAAGCATGGGGTGGTTGGCAAGTTCGTGGAGTTTTATGGTGAGGGAATGAGTGAACTGTCATTAGCCGACCGTGCCACTATT GCGAACATGTCTCCCGAATATGGTGCCACCATGGGCTTCTTTCCTGTGGATCATGTCACACTACAATACCTGAGGCTGACTGGAAGAAGTGATGAGACTG TTTCCATGATAGAATCATACTTGAGGGCAAACAAAATGTTTGTGGACTACAGTGAGCCACAACTGGACAGAGTTTATTCCTCTTATCTAGAGTTGCAGCT TGAAGAAGTAGAACCATGTGTATCAGGGCCTAAAAGGCCACATGACCGAGTTCCGATAAAAGAAATGAAATCTGATTGGCATTCATGCTTGGACAGTAGG GTGGGATTTAAGGGTTTTGCTGTGCCAAAGGAAGCACAGACAAAGGTTGCAGAATTTGATTTCCTTGGTACTCGTGCTCAACTTAGACACGGTGATGTCG TCATAGCAGCTATCACAAGTTGCACCAACACCTCGAATCCTAGTGTGATGCTTGGAGCTGCATTGGTTGCGAAGAAAGCTTGTGATCTAGGATTGGAGGT CAAACCATGGATTAAGACGAGTCTTGCTCCTGGTTCTGGTGTTGTCACTAAGTACCTACAGAAGAGTGGCTTGCAGAAGTACTTGAATCAGCTAGGATTC CATATCGTTGGGTATGGATGCACTACTTGCATTGGAAATTCAGGAGACATTCATGAAGCAGTAGCAGCAGCTATTACAGAAAATGATTTGGTGGCTGCAG CTGTACTGTCCGGTAACCGGAATTTCGAGGGCCGTGTACATCCCTTGACAAGAGCCAATTATTTAGCTTCCCCTCCGCTCGTGGTTGCATACGCCCTTGC TGGAACAGTTGACATTGACTTTGAAACGGAACCACTTGGAGTAGGAAAAGACGGGAAAGAGATATTTTTCAGGGACGTTTGGCCATCGACAGAAGAGGTT GCTGAGGTTGTACAATCAAATGTGCTGCCAGATATGTTCAAGGCTACTTACGAAGCCATTACCAAAGGAAACCCGATGTGGAACGAACTATCAGTGGCTG AAAAGAGTCTCTATGAATGGGAACCAGCATCAACATACATACACGAACCACCTTACTTCAAGGGCATGACCATGTCCCCTCCCGGACCACACAGCGTGAA AGATGCTTACTGCCTTCTCAACTTTGGAGACAGTATCACCACTGATCACATCTCCCCTGCTGGTAGCATCCACAAAAACAGTCCAGCAGCTAAGTACCTT ATGGAGCGTGGGGTTGACAGAAAGGACTTTAACTCTTATGGAAGTCGGCGTGGTAACGATGAGATAATGGCAAGGGGTACATTCGCCAACATTCGCATCG TCAATAAATTTCTGGGCGGAGAAGTTGGTCCCAAGACAATCCATATTCCCTCGGGAGAGAAGCTATCTGTCTTTGATGCTGCTTTGAAGTACAAGAGTGA AGGACAAGACACGATCATTCTGGCTGGTGCGGAGTATGGAAGTGGAAGCTCTCGTGATTGGGCTGCCAAGGGTCCAATGCTTCTGGGTGTAAAAGCCGTA ATTTCAAAGAGCTTCGAGAGAATTCATCGTAGTAATTTGGTGGGGATGGGAATCATCCCAATGTGTTTCAAGGCTGGAGAGGATGCCGATACGCTTGGCT TGACCGGTCACGAGCGTTTCACCATTGATTTACCAAGCAGCATCAGTGAAATCAGACCTGGTCAAGATGTGAAGGTGACTACAGATAATGGCAAGTCATT CACCTGCATATTGCGCTTCGACACTGAGGTTGAACTCGAGTATTTCAATCACGGAGGCATTCTGCAGTACGTGATCAGAAACTTGATCGGGTTGAACCAA TGA
AA sequence Show only first row Show all	>Lus10041858 pacid=23147077 polypeptide=Lus10041858 locus=Lus10041858.g ID=Lus10041858.BGIv1.0 annot-version=v1.0 MVSENPFNRILKTLEKPDGGEFGQYYSLPALDDPRVEKLPYSIRILLESAIRNCDEFQVKSNDVEKIIDWENSAPKLVEIPFKPARVLLQDFTGVPAVVD LACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQLNMELEFQRNNERFAFLKWGSNAFDNMLVVPPGSGIVHQVNLEYLGRVVFNTKGLL YPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATI ANMSPEYGATMGFFPVDHVTLQYLRLTGRSDETVSMIESYLRANKMFVDYSEPQLDRVYSSYLELQLEEVEPCVSGPKRPHDRVPIKEMKSDWHSCLDSR VGFKGFAVPKEAQTKVAEFDFLGTRAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACDLGLEVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGF HIVGYGCTTCIGNSGDIHEAVAAAITENDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFETEPLGVGKDGKEIFFRDVWPSTEEV AEVVQSNVLPDMFKATYEAITKGNPMWNELSVAEKSLYEWEPASTYIHEPPYFKGMTMSPPGPHSVKDAYCLLNFGDSITTDHISPAGSIHKNSPAAKYL MERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKFLGGEVGPKTIHIPSGEKLSVFDAALKYKSEGQDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV ISKSFERIHRSNLVGMGIIPMCFKAGEDADTLGLTGHERFTIDLPSSISEIRPGQDVKVTTDNGKSFTCILRFDTEVELEYFNHGGILQYVIRNLIGLNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	0	1
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	1.0	0.9114
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	4.0	0.7892
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	5.5	0.7738
AT5G56240			unknown protein		Lus10008344 [exp]	6.9	0.7909
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	7.2	0.8378
AT3G01810			unknown protein		Lus10037001 [exp]	8.3	0.8274
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	9.2	0.8256
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	19.7	0.7961
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	20.2	0.7729
AT4G18593			dual specificity protein phosp...		Lus10018112 [exp]	22.8	0.7552

Compare expression of checked genes

Lus10041858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.