Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35840 343 / 8e-121 RING/U-box superfamily protein (.1) AT2G17730 335 / 1e-117 NIP2 NEP-interacting protein 2 (.1.2) AT5G66070 325 / 5e-114 RING/U-box superfamily protein (.1.2) AT1G74410 138 / 2e-40 RING/U-box superfamily protein (.1) AT3G20395 110 / 1e-29 RING/U-box superfamily protein (.1) AT5G17600 75 / 2e-15 RING/U-box superfamily protein (.1) AT3G03550 74 / 3e-15 RING/U-box superfamily protein (.1) AT2G17450 72 / 3e-15 RHA3A RING-H2 finger A3A (.1) AT5G05280 71 / 6e-15 RING/U-box superfamily protein (.1) AT1G49200 69 / 3e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028406 [exp] 451 / 1e-163 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10021524 [exp] 152 / 1e-45 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10001654 [exp] 127 / 1e-35 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10021628 [exp] 123 / 3e-34 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10040073 [exp] 84 / 7e-20 AT3G20395 94 / 5e-24 RING/U-box superfamily protein (.1) Lus10013618 [exp] 77 / 2e-16 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10012745 [exp] 75 / 2e-15 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10024405 [exp] 72 / 2e-15 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10029037 [exp] 71 / 8e-15 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 403 / 2e-144 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 367 / 4e-130 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.001G435800 [exp] 150 / 8e-45 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.005G244800 [exp] 130 / 2e-37 AT4G35840 132 / 3e-38 RING/U-box superfamily protein (.1) Potri.005G244900 [exp] 82 / 2e-19 AT5G66070 79 / 1e-18 RING/U-box superfamily protein (.1.2) Potri.013G073500 [exp] 76 / 4e-16 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 73 / 9e-16 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 74 / 2e-15 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 71 / 4e-15 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 71 / 4e-15 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041859 pacid=23147019 polypeptide=Lus10041859 locus=Lus10041859.g ID=Lus10041859.BGIv1.0 annot-version=v1.0 ATGGAATTCTATCCATACCCACCTCGGTTCTCCGTCTCTTCGTTGCCCTGCTGTCGGAATTTCTTCGAGAAGGTTAAGGAAGTCTGCAACTTCGCTCTTT CTGCCGTCATTGGGAATGTCTTCTCTGCGATCCTCACCTTCTTCTTCGCATTAGTGGGGACCTTGTTGGGAGCCATGACTGGAGCTTTGATTGGTCAAGA AACTGAGAGTGGATTCGTTAGAGGTGCTGCTGTTGGTGCTATATCTGGTGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTCTAGTGCTTTGGCAATCA GATGAATCGGGGATCGGATGCATCTTGTACTTGATTGATGTCATTGCAAGTCTTCTCAGCGGGAGGCTAGTACGCGAACGAATCGGTCCTGCCATGTTAA GTGCTGTGCAAAGTCAGATGGGTGCTGTTGAGACGAGCTTCGAGGATGTTCCGAACATATTCGACACCGGTAGCACCAAAGGACTCCCAGGGGATTCGGT GGAGAAGATACCCAAAATCAAGATCACAAACAAAAACAATGTGGATGCTTCTGGGGATAGAGTTTCTTGTTCAGTTTGCCTCCAGGATTTCCAACTTGGA GAAACAGTTAGAAGTTTGCCACAGTGCCACCACATGTTCCACTTACCTTGCATAGACAAATGGCTCATCCAGCACGCTTCTTGCCCTCTTTGCAGAAGAG ACCTGTAA
AA sequence Show only first row Show all	>Lus10041859 pacid=23147019 polypeptide=Lus10041859 locus=Lus10041859.g ID=Lus10041859.BGIv1.0 annot-version=v1.0 MEFYPYPPRFSVSSLPCCRNFFEKVKEVCNFALSAVIGNVFSAILTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQS DESGIGCILYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFEDVPNIFDTGSTKGLPGDSVEKIPKIKITNKNNVDASGDRVSCSVCLQDFQLG ETVRSLPQCHHMFHLPCIDKWLIQHASCPLCRRDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	0	1
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	3.5	0.8158
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	3.7	0.7983
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	3.9	0.8558
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	7.2	0.8312
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	8.9	0.8099
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	8.9	0.7847
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	9.2	0.7597
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	11.2	0.8178
AT5G61340			unknown protein		Lus10015723 [exp]	11.8	0.6712
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	16.1	0.8021

Compare expression of checked genes

Lus10041859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.