Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 256 / 3e-76 THE1 THESEUS1, protein kinase family protein (.1) AT2G28960 249 / 1e-73 Leucine-rich repeat protein kinase family protein (.1) AT3G04690 249 / 1e-73 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G59700 247 / 4e-73 Protein kinase superfamily protein (.1) AT5G28680 247 / 6e-73 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G46290 247 / 6e-73 HERK1 hercules receptor kinase 1 (.1) AT2G14510 247 / 7e-73 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 246 / 2e-72 Leucine-rich repeat protein kinase family protein (.1) AT1G30570 245 / 3e-72 HERK2 hercules receptor kinase 2 (.1) AT5G02290 232 / 2e-71 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028407 [exp] 916 / 0 AT2G14510 258 / 1e-76 Leucine-rich repeat protein kinase family protein (.1) Lus10038595 [exp] 261 / 1e-82 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021003 [exp] 243 / 3e-74 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10042844 [exp] 248 / 2e-73 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10027509 [exp] 247 / 5e-73 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10028140 [exp] 247 / 5e-73 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10003312 [exp] 246 / 1e-72 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 245 / 3e-72 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10030308 [exp] 245 / 4e-72 AT3G46290 735 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108300 [exp] 496 / 4e-173 AT5G54380 245 / 2e-72 THESEUS1, protein kinase family protein (.1) Potri.001G467000 [exp] 257 / 1e-76 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.001G405500 [exp] 256 / 2e-76 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G164700 [exp] 254 / 2e-75 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.011G128000 [exp] 253 / 3e-75 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.017G096400 [exp] 243 / 3e-75 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G143049 [exp] 251 / 1e-74 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 251 / 1e-74 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 250 / 3e-74 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.004G079700 [exp] 245 / 2e-72 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041860 pacid=23146809 polypeptide=Lus10041860 locus=Lus10041860.g ID=Lus10041860.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCAGAGGGCAGTGCTAGCAGTCCCTGCCCATCTCCTAAAGTAATCACAAGCTCTTCTCAGAAAAGGACAGATGGGTTCGCCGCGGAACCGC CAGGTTCACATTTCCGGCGGCAGGGTGATTCAGGCAAGCACTTGAAACTCGTGTGGTTAGGCCTAATTGCAGGGATTGTAGTTGCAGTTCTGTTGGTTGT TGTGGTTATGCTTACGTTAGCTTTCAGGAAGAGGATTTCTCGAGGTCGAATTGTCAGGAAAGGAAGCTTGAAGAAACTCAACCTAAAGAGATTCGAAATG GAGGAGTTGGAGAGGGCAACCGACAATTTCAGTGATGAGCGTCTGTTGGGTTCAGGAGCCTTTGGGAATGTTTACAAAGGCTTCTTTCAAGATGGAGGGA TTACTCTGGCAGTTAAGAGAGCTCATGCTAATTCTTTCCACACTGATGGGGAGTTCATAAATGAAGTGATCTTGCTGTCCAAAGTCAGGCACAGAAATCT GATGTCATTGGTGGGATTTTGTGAAGAACCTGGGCCAAGAGGAGCCAAGATACTGGTGTATGAGTATGCACCAAATGGGTCTTTGCTGGAGTATATGATG GGAAGAGGAGGGAAGCAGTTGACTTGGCAGCAAAGAGTTAGTATAGCAATTGGGGCAGCTAGAGGCATAGCGCATTTGCACGACGGGATCCAGCCTAGCA TAATCCACCGCGACATCAAGCCGAGCAACATCCTAGTAGGGGAGAATTTCGAGGCCAAGGTTTCGGATTTTGGGTTGGTGAAGTCGGGGCCAACGGGTGA TCAAACACATGTTAGCACTCAGATCAAAGGAACTCCAGGATACCTTGATCCTGCATATTGTTCCAGCTGCCATCTAAGTCAATTCAGTGACGTGTACAGC TTTGGAGTGATCCTTTTGCAGCTTGTGACTGCTCGGCCTGCAGTTGATGCATCCAGAAGGAACTCTAATTACCATGTTATTGAATGGTCAAGGGCAAGCT TGGAGAGGGGTGACGTTGAAGATATATTGGATGCTAACCTTATGGTGCAATCCTGCAATATGGATATGATGCTGAAGATGGGACAGCTCGGCCTGAGATG TGTCGAGAGGATTCCGAAAGACCGTCCCACAATGAGTCAGGTGTGGCAGGAGCTGCAAGAAGCTTTGTTCGAAACGACAAGGATCACTCCAGGGGGATCT TTGACCACCTCTAATCAATCTATTAGTCTGGTGTGCCAATCGCTGCAAGAAGATTCGTTTGAAACGACCAGGATAACTCAAGAACGATCGTTGACCACCT CAAATCAATCGAACGAGGAGAAACTGACTGGATCATGTAGAAGCATTGCGAGTGTGAACGGAGTTAGGTTTGAGAGATTTAGCCTCGACATGGATGCCGG TTCTTCTGTAGGAGCAACAAGCTTAAGGTTCTTTGAGGATACCAGTATAGACATCGATCTTCTTCGGAATAATATCGATAGAACCGTTGAGGACCATAGG TAA
AA sequence Show only first row Show all	>Lus10041860 pacid=23146809 polypeptide=Lus10041860 locus=Lus10041860.g ID=Lus10041860.BGIv1.0 annot-version=v1.0 MAAAEGSASSPCPSPKVITSSSQKRTDGFAAEPPGSHFRRQGDSGKHLKLVWLGLIAGIVVAVLLVVVVMLTLAFRKRISRGRIVRKGSLKKLNLKRFEM EELERATDNFSDERLLGSGAFGNVYKGFFQDGGITLAVKRAHANSFHTDGEFINEVILLSKVRHRNLMSLVGFCEEPGPRGAKILVYEYAPNGSLLEYMM GRGGKQLTWQQRVSIAIGAARGIAHLHDGIQPSIIHRDIKPSNILVGENFEAKVSDFGLVKSGPTGDQTHVSTQIKGTPGYLDPAYCSSCHLSQFSDVYS FGVILLQLVTARPAVDASRRNSNYHVIEWSRASLERGDVEDILDANLMVQSCNMDMMLKMGQLGLRCVERIPKDRPTMSQVWQELQEALFETTRITPGGS LTTSNQSISLVCQSLQEDSFETTRITQERSLTTSNQSNEEKLTGSCRSIASVNGVRFERFSLDMDAGSSVGATSLRFFEDTSIDIDLLRNNIDRTVEDHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	2.6	0.9684
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	3.2	0.9620
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	3.5	0.9609
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	3.9	0.9560
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	4.0	0.9569
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	5.3	0.9531
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	8.2	0.9401
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	8.5	0.9531
AT4G06534			unknown protein		Lus10024806 [exp]	9.9	0.9458
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	10.0	0.9389

Compare expression of checked genes

Lus10041860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.