Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51370 594 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 579 / 0 Protein phosphatase 2C family protein (.1) AT4G38520 552 / 0 Protein phosphatase 2C family protein (.1.2) AT3G12620 492 / 9e-175 Protein phosphatase 2C family protein (.1.2) AT3G55050 469 / 7e-166 Protein phosphatase 2C family protein (.1.2) AT5G02760 419 / 4e-146 Protein phosphatase 2C family protein (.1) AT3G17090 394 / 2e-136 Protein phosphatase 2C family protein (.1.2) AT5G06750 371 / 8e-127 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 369 / 2e-126 Protein phosphatase 2C family protein (.1) AT3G16560 132 / 3e-34 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027825 [exp] 560 / 0 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 560 / 0 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 560 / 0 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 559 / 0 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 512 / 0 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 506 / 4e-180 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 501 / 3e-178 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10028408 [exp] 489 / 7e-174 AT3G51370 457 / 5e-163 Protein phosphatase 2C family protein (.1.2) Lus10001976 [exp] 431 / 2e-151 AT3G12620 524 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108500 [exp] 644 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 616 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 607 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 595 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 499 / 2e-177 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 498 / 6e-177 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 466 / 1e-164 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 415 / 2e-144 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 411 / 4e-143 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 390 / 2e-134 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10041861 pacid=23146725 polypeptide=Lus10041861 locus=Lus10041861.g ID=Lus10041861.BGIv1.0 annot-version=v1.0 ATGAACTTATTGAGGACCTGCTGGAGCCCGAACTCGGATGGTGGCTTTGGCGGCCACTCAGGTTCGGATTCAGCCGGCCGGCAAGATGGACTCCTTTGGT ACAAAGACTCCGGTCACCACTTGACTGGTGAATTCTCTATGGCTGTTGTTCAAGCCAATAACTTGCTGGAGGATCAGAGCCAGCTCGAATCCGGCCCTTT GAGCACACTCGAATCCGGCCCCCACGGAACCTTCATTGGGGTCTATGATGGTCATGGAGGACCCGAGACTTCGAGATTCGTCAACGATCATCTCTTCCAG CACTTAAAGAATTTTGCTTCGGAGCAACAGTCGATATCTGTGGACGTGATAAAGAAAGCGTATCAAGCAACGGAAGATGGTTTCCACTCTGTCGTAACAA AACAGTGGCCGATGAAGCCTCAAATCGCAGCCGTTGGATCGTGCTGTTTAGTTGGTGTGATATGTGGAGGTACCCTTTATATTGCTAATGTTGGGGATTC CAGAGCTGTGCTTGGCAAAGCTGTCAAGGCAACCGGTGAAGTTCTTGCTATTCAGCTATCATCCGAGCATAATGTCAGCATCGAATCGGTTAGACAAGAG ATGCACTCTTTGCACCCGGATGATAAGCATATTGTTGTCTTGAAGCATAATGTATGGCGTGTCAAAGGCCTCATTCAGGTTTCGAGATCGATCGGTGATG TGTATCTGAAGAAGGCCGAGTTCAACAGAGAGCCACTATATGCAAAGTTCCGGCTCCGAGATCCTATAAAGAGACCGATATTAAGTGCTGAGCCGGCTAT CACCGAGCATGAACTCGAACCTCATGATCAATTCCTCATCTTTGCATCTGATGGGCTGTGGGAGCACCTTAGCAATCAAGATGCAGTTGACATAGTGCAA AACCATCCACGCCATGGTATTGCGAGGAGGCTGGTGAAAGCCGCACTGCTCGAGGCAGCCAAGAAGAGAGAAATGAGGTACTCGGATCTGAAGAAGATTG ACCGGGGTGTTCGCAGGCACTTCCATGACGACATCACGGTTGTGGTCGTATTCCTCGACTCGAATCTCGTAAGTAGAGCTAGCTCGGCTAGAGGGCCGAC TGTATCGGTCCGAGGGGGTGGGATTCACCTGCCTGCAAAGACACTAGCGCCAATGGAACTAAACACCAACTGCTGA
AA sequence Show only first row Show all	>Lus10041861 pacid=23146725 polypeptide=Lus10041861 locus=Lus10041861.g ID=Lus10041861.BGIv1.0 annot-version=v1.0 MNLLRTCWSPNSDGGFGGHSGSDSAGRQDGLLWYKDSGHHLTGEFSMAVVQANNLLEDQSQLESGPLSTLESGPHGTFIGVYDGHGGPETSRFVNDHLFQ HLKNFASEQQSISVDVIKKAYQATEDGFHSVVTKQWPMKPQIAAVGSCCLVGVICGGTLYIANVGDSRAVLGKAVKATGEVLAIQLSSEHNVSIESVRQE MHSLHPDDKHIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLRDPIKRPILSAEPAITEHELEPHDQFLIFASDGLWEHLSNQDAVDIVQ NHPRHGIARRLVKAALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASSARGPTVSVRGGGIHLPAKTLAPMELNTNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51370			Protein phosphatase 2C family ...		Lus10041861 [exp]	0	1
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	1.0	0.8442
AT4G14230			CBS domain-containing protein ...		Lus10034024 [exp]	1.4	0.7971
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	2.0	0.7934
AT1G78110			unknown protein		Lus10012052 [exp]	4.0	0.7798
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	9.2	0.7956
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	13.0	0.7890
AT2G17550			unknown protein		Lus10016693 [exp]	13.7	0.7703
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	14.0	0.7807
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	14.4	0.7698
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	17.7	0.7255

Compare expression of checked genes

Lus10041861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.