Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35870 1059 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT1G11960 79 / 9e-15 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 78 / 1e-14 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 62 / 2e-09 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G62320 54 / 3e-07 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 54 / 4e-07 ERD (early-responsive to dehydration stress) family protein AT4G04340 46 / 8e-05 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT3G01100 44 / 0.0005 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 43 / 0.0008 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028409 [exp] 1398 / 0 AT4G35870 1217 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 61 / 4e-09 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10015551 [exp] 60 / 6e-09 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10020032 [exp] 60 / 7e-09 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10000660 [exp] 55 / 2e-07 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 54 / 4e-07 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 49 / 2e-05 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002996 [exp] 49 / 2e-05 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10035300 [exp] 49 / 2e-05 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108600 [exp] 1090 / 0 AT4G35870 1048 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.007G063700 [exp] 1044 / 0 AT4G35870 1089 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G005900 [exp] 59 / 9e-09 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G115800 [exp] 54 / 3e-07 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G226800 [exp] 54 / 4e-07 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.014G156100 [exp] 53 / 9e-07 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.010G164100 [exp] 45 / 0.0002 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.011G009900 [exp] 45 / 0.0003 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10041862 pacid=23147065 polypeptide=Lus10041862 locus=Lus10041862.g ID=Lus10041862.BGIv1.0 annot-version=v1.0 ATGCCCGGTCCCACCGCCATCCTCGCCAAGCTCCTCGCAGTCTGGCACGCAACTGGGAGGGAGATCGCTCGACATTGTGGAGCTGATGCAGCGCAGTTCC TTATAATCGAAGGCGGAAGCTTCGGCGTGTTATTGTCGATAGCTGCTTTATCGATCTGCGTCCTACTCCCGGTGAATCTCTATGCCGGGACGGCGGTGCT CGGCGACCAGTTCTCGAAGACCACGATTAATCATATCGAGAAAGGTTCTGCACTTCTTTGGGTACACTTTTTGTTTGCTGTTGTCGTCGTGGGTTTAGTG CATTTTGGCATGTCGATGATTGAGGAGAGACTTAAAATCACTAGGTTTAGGGATGGGAATGGGAATTTGAGTGATCCCAACGCGAATTCCACTGCTATCT TCACTATCATGGTGCAAGGATTGCCTAAGAGTCTAGGTCCTGATAAGACTTTGTTGGAAGAGTACTTTAGATTGAAGTATCCTGGGAAGGTTTACAAAGT TATTATGCCTATGGATTTGTGTGCGTTGGGTGAGTTAGCCACTGAATTGGTCACCGTTAGGGATGAAATTACTTGGCTGGTTGCCCGAATGGACTCTAGG CTGTTACCTGAAGGAGCTGATAATGAATACTCAGGAGAAGGATTTTGGGAGAAATCTAGAGTGTGGATGATTTCTGTTTGGAGGAGAGTGAAGAATTTGT GGGATAGAATGATGGAGGGATTGGGTTATACTGACGAAGATAAGCTAAGACGATTGCAAGAACTGAGAGCTCAACTAGAAACTGATCTGGCTTCATTTAA GGAAGGTCGTGCACCAGCTGCTGGTGTTGCGTTCATTGTATTAAAGGATGTTTACACGGCTAATAAAGCTCTCCAAGACCTTAGAAGTGAGAGGAAGAGG AGGTTCGGCAAGTTTTTCTCTGTGACGGAGCTGCGATTGCAAAGAAACCAATGGAAAGTGGAGAGAGCCCCTTTGGCAACTGATATTTACTGGAACCACC TGGGAACTACAAAGTTGTCCTTGAGGTTACGGCGGATCTTTGTGAATACGTGCCTATTGTTGATGCTTCTGTTCTTTAGTTCTCCTCTCGCAATTATAAC TGCCCTGCAGAGTGCTGGCAGGATTATTAACGCAGAGGCAATGGACAATGCCAAATCGTGGTTGGATTGGGTGCAAAGCTTCAGTTGGTTTGCTTCCCTT GTGTTCCAGTTCTTGCCCAATGTCATGGTATTCGTGAGTATGTACGTAATAGTACCCTCTGCACTTTCTTACCTCTCCAAGTTTGAACAGCATCTTACAC TGTCAGGGGAGCAAAGAGCTGCACTTTTGAAGATGGTTTGCTTCTTCCTCGTAAACCTAATCTTATTGAAAGCTCTGGTTGAATCTTCTCTAGAGAGCGC GATTTTGAAAATGGGCAGGTGCTATTTGGAGGACGGTGAAGATTGCAAAAGGATCGAGCAATATATGAGCGCATCGTTCCTATCAAGATCCTGTCTTTCT TCATTGGCATTTCTAATCACAAGCACTTTCCTTGGGATATCGTTCGATCTATTAGCTCCAATGCCTTGGATAAAGAGGAAAATACAGATGTTCCGGAAGA ACGACATGCTTCAGCTTGTACCAGAACGAAGCGAAGACTACCCGTTGGAAAATCAGACCGCGGTGGATAGCCTCCAGAGACCGCTGATGCCGAATTATGC ATTCGACTCCCCCACACTCAACCGAAACAATTCGGACGGGCAAGATCTTTCTGAATATCCAATCAGCAGCTTGAGCAGGACATCTCCCATTCCGAAGCAG AAGTTCGATTTCGCTCAGTATTATGCATTCAACTTGACGATCTTTGCCCTCACGTTGATATACTCGTCTTTCGCTCCGCTGGTGGTCCCTGTGGGTGCGA TCTATTTTGGATATCGGTACATGGTGGATAAGTACAACTTCCTGTTTGTGTACAGAGTCCGGGGTTTCCCTGCTGGGAACGATGGAAGGTTGATGGACGT GGTGCTGGGCGTGATGAGTTTCTGCGTCGATCTATATCTTGTATCGATGCTGTTGTTCTTTGCGGTACAAGGTGATTCGGCAAAGCTGCAAGCCATCTTC ACGCTTGGGTTGCTAGTAGTGTACAAACTTTTGCCTTCAGATAGAGACTATTTCCACCCTGCACTTTTACAAGGCTTTCAAACTGTTGATAGCGTTGTAG ATGATGGACCCGTTGACTACGAGGTTTTCTCGCAACCCACGTTCGACTGGGATATGTACAGTCCTTGA
AA sequence Show only first row Show all	>Lus10041862 pacid=23147065 polypeptide=Lus10041862 locus=Lus10041862.g ID=Lus10041862.BGIv1.0 annot-version=v1.0 MPGPTAILAKLLAVWHATGREIARHCGADAAQFLIIEGGSFGVLLSIAALSICVLLPVNLYAGTAVLGDQFSKTTINHIEKGSALLWVHFLFAVVVVGLV HFGMSMIEERLKITRFRDGNGNLSDPNANSTAIFTIMVQGLPKSLGPDKTLLEEYFRLKYPGKVYKVIMPMDLCALGELATELVTVRDEITWLVARMDSR LLPEGADNEYSGEGFWEKSRVWMISVWRRVKNLWDRMMEGLGYTDEDKLRRLQELRAQLETDLASFKEGRAPAAGVAFIVLKDVYTANKALQDLRSERKR RFGKFFSVTELRLQRNQWKVERAPLATDIYWNHLGTTKLSLRLRRIFVNTCLLLMLLFFSSPLAIITALQSAGRIINAEAMDNAKSWLDWVQSFSWFASL VFQFLPNVMVFVSMYVIVPSALSYLSKFEQHLTLSGEQRAALLKMVCFFLVNLILLKALVESSLESAILKMGRCYLEDGEDCKRIEQYMSASFLSRSCLS SLAFLITSTFLGISFDLLAPMPWIKRKIQMFRKNDMLQLVPERSEDYPLENQTAVDSLQRPLMPNYAFDSPTLNRNNSDGQDLSEYPISSLSRTSPIPKQ KFDFAQYYAFNLTIFALTLIYSSFAPLVVPVGAIYFGYRYMVDKYNFLFVYRVRGFPAGNDGRLMDVVLGVMSFCVDLYLVSMLLFFAVQGDSAKLQAIF TLGLLVVYKLLPSDRDYFHPALLQGFQTVDSVVDDGPVDYEVFSQPTFDWDMYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	0	1
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	2.0	0.8729
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	3.9	0.8622
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	4.2	0.8690
AT3G18310			unknown protein		Lus10023992 [exp]	5.3	0.8590
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	5.5	0.8618
AT3G22530			unknown protein		Lus10004901 [exp]	6.7	0.8685
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	6.9	0.8536
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10020345 [exp]	8.9	0.8672
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10019007 [exp]	10.0	0.8168
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	15.1	0.8464

Compare expression of checked genes

Lus10041862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.