Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33360 362 / 5e-125 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09490 79 / 3e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 75 / 7e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 70 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 69 / 6e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 61 / 4e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 60 / 4e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G80820 60 / 5e-10 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G42800 60 / 6e-10 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G15950 59 / 1e-09 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021740 [exp] 380 / 3e-132 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10041031 [exp] 66 / 5e-12 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10039595 [exp] 64 / 2e-11 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019734 [exp] 64 / 3e-11 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 64 / 4e-11 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016389 [exp] 63 / 5e-11 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 63 / 7e-11 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 62 / 1e-10 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 62 / 1e-10 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127500 [exp] 363 / 1e-125 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127400 [exp] 357 / 5e-123 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G057600 [exp] 67 / 2e-12 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G033600 [exp] 66 / 7e-12 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.001G045000 [exp] 66 / 8e-12 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 65 / 1e-11 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 64 / 3e-11 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 64 / 3e-11 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G057500 [exp] 64 / 4e-11 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045500 [exp] 63 / 5e-11 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10041863 pacid=23146819 polypeptide=Lus10041863 locus=Lus10041863.g ID=Lus10041863.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTGGTGACCGGCGCATCAGGTTACGTGGGTAGTCAACTATGTCAGACTCTATCACAACGAGGTTATTCCGTCCGGTCACTGGTCCGTCACA CTAGCGACGTCTCCTCTCTGAACTCTGCCTCTGATCATTTCGAAATCGCCTACGGTGACGTCACTGACTATGGTTCGCTCCTCGAGGCCTTCCACGGCTG CGACGCCGTATTTCACGCCGCAGCGATCACCGACTTGTGGCTACCGGATCCTTCCAAGTTCTTCGAGGTCAACGTGGAAGGGGTGAGGAATGTGGTGCGA GCGGCTAGAGAAATTACGACGATTAAGAAGATCGTGTGCACTTTGTCGGCGTCGGCGCTTGGGCCTACCGACGGTCGCGCCGCCGACGAGAATAAGGTAC ACTCGGGGAAAACATTTTCAACGGACTATGAGAGGTCACAAGTGGCTGCACTAAAGGTAGCCATGGAAGCTGCAACAGTAGGAGTACCAATCGTCGTGGT CTATCTCGGTGTTGTTTATGGCCCTGGAAAACTAACTTCCGGCAACCTTACCGCTCAAATGCTGATTGAGTATTTCAACGGAGGCTTGCTGGCTAGAATC GGATTCAGCAAGGATGTGTTCTCCTTAAGCCATATCGACGATGCAGTACAAGGGCACATTGCGGCGATGGAACGAGGGGAAGTCGGCGAAACGTACTTGC TTACCGGAGAAAACGCATCATTTGCACGAGTTTTTGATTTAGCTTCCAAAATCACAGGAAAGACAAAGCCCAGAATCACAATTCCTTTGTGGGTCGTTGA GATTCTTGGGTGGTTGTCAGTGCTTCATTCCAGAATTACAGGACAACTCCCTCTCATCAGTCCACCGGCCGTAGATTCTTTAAGACGGGAATGGGAATAT TCCTGTGAGAAAGCAAGAAGGGAGTTAGGATACAATCCTCGAGAGTTGGAAGATGGATTAGTGGATCTGCTCGTGTGGCTTAAGGGCTTGAAATTAATAC ATTATTGA
AA sequence Show only first row Show all	>Lus10041863 pacid=23146819 polypeptide=Lus10041863 locus=Lus10041863.g ID=Lus10041863.BGIv1.0 annot-version=v1.0 MKVVVTGASGYVGSQLCQTLSQRGYSVRSLVRHTSDVSSLNSASDHFEIAYGDVTDYGSLLEAFHGCDAVFHAAAITDLWLPDPSKFFEVNVEGVRNVVR AAREITTIKKIVCTLSASALGPTDGRAADENKVHSGKTFSTDYERSQVAALKVAMEAATVGVPIVVVYLGVVYGPGKLTSGNLTAQMLIEYFNGGLLARI GFSKDVFSLSHIDDAVQGHIAAMERGEVGETYLLTGENASFARVFDLASKITGKTKPRITIPLWVVEILGWLSVLHSRITGQLPLISPPAVDSLRREWEY SCEKARRELGYNPRELEDGLVDLLVWLKGLKLIHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	2.4	0.9236
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	3.0	0.9422
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	5.7	0.9261
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	6.0	0.9297
					Lus10002087 [exp]	8.2	0.9260
AT3G21710			unknown protein		Lus10039666 [exp]	9.5	0.9221
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	9.8	0.9224
AT2G36090			F-box family protein (.1)		Lus10021330 [exp]	10.5	0.8954
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	10.5	0.9236
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	11.0	0.9190

Compare expression of checked genes

Lus10041863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.