Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35880 611 / 0 Eukaryotic aspartyl protease family protein (.1) AT2G17760 425 / 5e-145 Eukaryotic aspartyl protease family protein (.1) AT3G51330 356 / 8e-118 Eukaryotic aspartyl protease family protein (.1) AT3G51350 345 / 2e-113 Eukaryotic aspartyl protease family protein (.1) AT3G51360 337 / 8e-111 Eukaryotic aspartyl protease family protein (.1) AT3G51340 318 / 5e-103 Eukaryotic aspartyl protease family protein (.1) AT5G10080 279 / 4e-88 Eukaryotic aspartyl protease family protein (.1) AT1G65240 126 / 2e-31 Eukaryotic aspartyl protease family protein (.1) AT3G02740 117 / 3e-28 Eukaryotic aspartyl protease family protein (.1) AT5G36260 115 / 1e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028410 [exp] 848 / 0 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028411 [exp] 433 / 3e-148 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 396 / 2e-133 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019678 [exp] 305 / 7e-98 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 280 / 2e-89 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 118 / 3e-28 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021485 [exp] 110 / 6e-26 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 108 / 3e-25 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 108 / 4e-25 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063800 [exp] 671 / 0 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 403 / 2e-136 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 326 / 4e-106 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 273 / 1e-85 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 122 / 6e-30 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 118 / 1e-28 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 116 / 6e-28 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 114 / 3e-27 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 110 / 5e-26 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 108 / 3e-25 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10041864 pacid=23146702 polypeptide=Lus10041864 locus=Lus10041864.g ID=Lus10041864.BGIv1.0 annot-version=v1.0 ATGCCGTCTTTCTTGAAATCCCCTCTCTTCTTCCTCGCTTCTTGCCTCGCCGTACTCAGTAGCAGCAGTCTCACTTCTTCTTCTTCTTCCAATGGCGGCC GCATCTTCACCTTCGAGATGCACCACCGCTACTCCGACACCTACAAGAACTGGTACACTCGCGGTGCCCCCCACTTCCCTCCTCACAACTACTGGCCCAA AGAAGGAACCTTCGAGTACTACGCCGCTCTCGCCCGCCGCGACCACTTCCTCCGCGGCCGCCGTCTCTCCGACGAATTCCCCCTCGCCTTCTCCGACGGA AACTCCACCTTCCGGATTAGCTCCCTGGGATTCTTGCATTATACGACGGTGGAATTAGGGACGCCGGGAGTGAAATTCATGGTGGCTCTTGACACTGGGA GTGACTTGTTCTGGGTTCCTTGTCAATGTAGCAGATGTGCTCCTACTGAGGGATCTACTTATTATGCTTCTCAGGATTTTGAACTAAATATGTACAATCC TAGTGAATCATCAACGAGCAAAAGAGTCACTTGTGATGATGACCTATGTATACACCGCAATCGTTGCTTCCAATCTCTAAGCAACTGTCCTTACGCAGTA TCGTATGTTTCTGCTCAAACGTCTACTTCAGGGATCTTGGTGCAGGATCTTCTGCATTTAACTACAGAAGGCGGTTATTTTGATGTTGTCGAGGCACCAG TGACGTTTGGATGTGGACAGGTCCAGAGCGGTTCGTTTCTAGACATTGCAGCTCCGAACGGTTTGTTCGGGCTTGGGATGGAGAAGATATCAGTTCCAAG TACTTTGTCAAGGGAAGGTTTGATATCGGATTCTTTTTCAATGTGCTTTGGTCGTGATGGCGTTGGAAGGATCAGTTTTGGGGATAAGGGAAGCCCCGAC CAGGACGAAACTCCGTTTAATCTCAACCCATCACACCCAACTTATAATATCACAGTGACGCGTGTTAGAGTAGGTACGACCACAATTGATGCTCAAGATA TTACAGCTCTTTTCGATTCCGGGACCTCTTTTACTTACTTGGTCAACCCTATCTACTCGAGAATCTCTGAGAGGTTCCATTCACAAGCAAGGGATAGCAG GCGTGCACCTGATTCTAGAATCCCATTTGAGTATTGCTACAATATGAGTCCTGATGCAAGTACTAGCTTGATACCAAGTTTGACTTTGATCATGAAAGGA GGAAACCATTATACCGTCTTTGACCCGATCATTGTCATCTCCACTCAGGGCGAGCTTGTATACTGTCTGGCTATTGTAAAGAGTGCAGAGCTCAATATAA TTGGACAGAACTTCATGACAGGTTACCGGATAGTGTTTGATAGAGAAAGACTCGTTCTTGGTTGGAAGAAGTTCGATTGTAAGTGTGATTGCGTTTGCTT TAGGATAAAGTTCCAAGCGTTGTCAGATGAAAAACTATAA
AA sequence Show only first row Show all	>Lus10041864 pacid=23146702 polypeptide=Lus10041864 locus=Lus10041864.g ID=Lus10041864.BGIv1.0 annot-version=v1.0 MPSFLKSPLFFLASCLAVLSSSSLTSSSSSNGGRIFTFEMHHRYSDTYKNWYTRGAPHFPPHNYWPKEGTFEYYAALARRDHFLRGRRLSDEFPLAFSDG NSTFRISSLGFLHYTTVELGTPGVKFMVALDTGSDLFWVPCQCSRCAPTEGSTYYASQDFELNMYNPSESSTSKRVTCDDDLCIHRNRCFQSLSNCPYAV SYVSAQTSTSGILVQDLLHLTTEGGYFDVVEAPVTFGCGQVQSGSFLDIAAPNGLFGLGMEKISVPSTLSREGLISDSFSMCFGRDGVGRISFGDKGSPD QDETPFNLNPSHPTYNITVTRVRVGTTTIDAQDITALFDSGTSFTYLVNPIYSRISERFHSQARDSRRAPDSRIPFEYCYNMSPDASTSLIPSLTLIMKG GNHYTVFDPIIVISTQGELVYCLAIVKSAELNIIGQNFMTGYRIVFDRERLVLGWKKFDCKCDCVCFRIKFQALSDEKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35880			Eukaryotic aspartyl protease f...		Lus10041864 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	23.3	0.8431
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	29.7	0.8359
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	30.7	0.8342
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	31.7	0.8128
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	33.5	0.8334
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	38.9	0.8161
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	46.3	0.8189
AT1G75150			unknown protein		Lus10010814 [exp]	47.0	0.8190
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	52.1	0.8179
AT4G16807			unknown protein		Lus10010995 [exp]	57.7	0.8087

Compare expression of checked genes

Lus10041864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.