Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17760 489 / 1e-169 Eukaryotic aspartyl protease family protein (.1) AT4G35880 417 / 2e-141 Eukaryotic aspartyl protease family protein (.1) AT3G51330 365 / 1e-120 Eukaryotic aspartyl protease family protein (.1) AT3G51350 357 / 1e-117 Eukaryotic aspartyl protease family protein (.1) AT3G51360 351 / 5e-116 Eukaryotic aspartyl protease family protein (.1) AT3G51340 332 / 4e-108 Eukaryotic aspartyl protease family protein (.1) AT5G10080 262 / 5e-81 Eukaryotic aspartyl protease family protein (.1) AT1G08210 120 / 3e-29 Eukaryotic aspartyl protease family protein (.1) AT4G33490 119 / 3e-29 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 115 / 1e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028411 [exp] 915 / 0 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028410 [exp] 427 / 3e-144 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 410 / 5e-139 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019678 [exp] 262 / 6e-81 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 241 / 8e-74 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10025687 [exp] 127 / 7e-32 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 127 / 3e-31 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 124 / 4e-30 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018146 [exp] 122 / 4e-30 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108700 [exp] 522 / 0 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.007G063800 [exp] 436 / 6e-149 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 276 / 2e-86 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 244 / 3e-74 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 124 / 3e-30 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 122 / 9e-30 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 112 / 3e-26 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.002G081400 [exp] 110 / 1e-25 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 108 / 4e-25 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 108 / 7e-25 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10041865 pacid=23147037 polypeptide=Lus10041865 locus=Lus10041865.g ID=Lus10041865.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTCCTGGATATTTTGCTCTACTGGTGGGGATCTTGGTTCTACTGTTGGGCGACTCCCCTTGCTGGGGATTCGGAACAATTGGGTTTGATT TCCACCACAGCTACTCCGATCAGGTGAAAGGGATGTTGGCTGTCGACGAGCTACCAGAGAAAGGAACTCCTCACTACTATGCTGCCATGGCCCACCGAGA CCATGTTAATTGGAAGACTAAACTCCACGGCCGTGGCTTGCTCGATGATGATCAGACCACCCTGACTCCTCTCACTTTCGGCGACGGCAACGAGACTTAC CGCCTCAATTCCTTGGGATACTTACATTACGCCAATGTTTCGGTCGGGACACCAAGCGTGTCGTTTCTAGTAGCATTGGACACTGGCAGCGATCTCTTCT GGTTACCCTGTGATTGCAAGAGCTGCGTTCGTGGCTTACAGACTTCATCTGGCCAGAAAATAGACTTCAATATCTACAGTCCAAATGCATCATCCACGAG CGAAAGCATCAGTTGCAGCAACAGCTTGTGCCCCTCACAAGGGCAGTGCCCTTCCCCGCAGATCGATTGCAAGTATAAGGTTGAATACCTTGACAATGGT ACTTCATCCACCGGAGTCCTTGTTGAGGATGTGTTGCATTTGGCACCAGATGTGACTAAGTCTAAGCCTCTTGAAGCCAAGATCACATTCGGTTGTGGTC AGGTGGAGACAGGTTCGTTCCTAGACGGGGCAGCTCCCAACGGCTTGTTTGGGCTCGGGATGTCCAATGTGTCGGTTCCTAGTACTTTAGCTAGAGAAGG ATACACTTCCAATTCATTCTCCATGTGTTTTGGAGAAGATGGGTTGGGAAGAATCAGCTTTGGAGATACAGGAAGTTCAAACCAAGGCGAAACGCCTTTT AATCTGAGAAAATTGCATCCGACGTACAACATCAGTATCGATCAGATAGTTGTGGGAGGAAACACTGAGGACATTGAGTTGTCAGCAATTTTCGACACTG GAACCTCGTTCACTTACTTGAATGATCCTGCTTATTCTGTTATAACCAAGAATTTTGATAGTTTGGTCAAAGATCCGCGCCATTCTTCATCGTCAACTAA ACTCCCTTTCGAGTACTGCTACGAAATAAGCTCGAACCAGACAGATGTGCCTACACTCGATCTGATGATGAAAGGCGGACAACCCTTCAACGTCACCGAC CCTCTAGTATTCGTTAATCTTCAGAATGGCGGGGGGCTTTTGTACTGTCTAGGACTGGTGAAGAGCGGCAATGTGAACATTATCGGACAGAACTTCATGA CTGGTTATAAAGTCGTATTTGACCGAGAAAGGAATGTGCTTGGTTGGACAACATCAGATTGTTACGCCAACCGCAACTCCAACAGCTTACCGATCGGCCC AACAAGCTCTTATGCTATTCCGCCAGTTACAGCCGTGAACCCGGAGGCCACAGATGCCGGGAGGAGCAATACCAGTGTTTCATCAGGATATCATTCAACA CTGCAGCTAACATCATTCAGTTTCGGAGTCGTCATTGCTCTTGTGGTCTTCTTGTTGGTTTGA
AA sequence Show only first row Show all	>Lus10041865 pacid=23147037 polypeptide=Lus10041865 locus=Lus10041865.g ID=Lus10041865.BGIv1.0 annot-version=v1.0 MASSPGYFALLVGILVLLLGDSPCWGFGTIGFDFHHSYSDQVKGMLAVDELPEKGTPHYYAAMAHRDHVNWKTKLHGRGLLDDDQTTLTPLTFGDGNETY RLNSLGYLHYANVSVGTPSVSFLVALDTGSDLFWLPCDCKSCVRGLQTSSGQKIDFNIYSPNASSTSESISCSNSLCPSQGQCPSPQIDCKYKVEYLDNG TSSTGVLVEDVLHLAPDVTKSKPLEAKITFGCGQVETGSFLDGAAPNGLFGLGMSNVSVPSTLAREGYTSNSFSMCFGEDGLGRISFGDTGSSNQGETPF NLRKLHPTYNISIDQIVVGGNTEDIELSAIFDTGTSFTYLNDPAYSVITKNFDSLVKDPRHSSSSTKLPFEYCYEISSNQTDVPTLDLMMKGGQPFNVTD PLVFVNLQNGGGLLYCLGLVKSGNVNIIGQNFMTGYKVVFDRERNVLGWTTSDCYANRNSNSLPIGPTSSYAIPPVTAVNPEATDAGRSNTSVSSGYHST LQLTSFSFGVVIALVVFLLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	0	1
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	3.9	0.8021
AT1G10820			Protein of unknown function (D...		Lus10029076 [exp]	4.5	0.7338
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	5.6	0.8203
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	6.3	0.7695
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	7.6	0.8024
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	7.9	0.7759
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	9.5	0.7743
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	10.6	0.7756
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	14.0	0.7828
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	15.0	0.7198

Compare expression of checked genes

Lus10041865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.