Plant FIBer expression Database

Lus10041866 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01160 287 / 2e-86 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028412
[exp]
862 / 0 AT3G01160 496 / 2e-166 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G108800
[exp]
361 / 5e-114 AT3G01160 334 / 3e-104 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08159 NUC153 NUC153 domain
Representative CDS sequence
>Lus10041866 pacid=23146995 polypeptide=Lus10041866 locus=Lus10041866.g ID=Lus10041866.BGIv1.0 annot-version=v1.0
ATGGATACCGCCGCCGGCAAGAAGCAGAACCAGAAGAAGATGAAAGGTGGAGTAAGAAAGCAACGACCCGAAGGTTCCAACAGCGATGGGATAGCTGGAA
TTGGCGGCAGCGCCGATATGGTTTCTGATCCTCGGTTTGCTTCCGCACACACCGACCCTCGGTTCCAGAAAGTTCCGAAGAAAACAACGAAGGTCATCAT
CGATTCTCGATTCAGCAGGGTGTTCAAGGATAAGGACTTCGTCGGATCTTCCGCTCCTTTAGACAAGCGCGGCAGGCGGAAGAAGCAGGACTCGTCGAGT
GCTCTTCGCCATTATTATCAAATGGAGGAAGGTGAGGGAATGAAGAGTGGGAAAGCGGAACAGAAGGAGGAAGACACTGAAAGTGAAGATGAAAATGTGA
TTGAGCAGGAGCAATTGAGGAAAAAACCTGCTCTCGCTGCTGCGGAAAGCGAGTCCAGCAGCGAAGCTGAGTCTTCGGATTCGGATGATGAGAATCAAGA
AGAAGGTGAAGATGATGATACCACTACAGATGAAGAAGATGGAGCCGGGTTGGTCTTTGAGGACGATGTGCCTGAAGTTGAGGTGGAGAACATACCAGTT
GTTGAAGACGGAACCAGAAGGCTGGCTGCTGTCAATATGGACTGGAGACATGTTAGGGCTGTCGATTTATTGGTAGTGCTAAGATCATTTCTCGAAAATG
GTGGAATTATCTCGTCTGTAGCTGTATATCCTACGGAATTTGGTCTTCAGCGCATGAAAGAAGAAGTTAACGGTCCTGTTGGCTTATTTGACGACGAGGA
TAAAGATAAAGATGAAGATGAAGACGATAACAATGATGATGAATTAGATGAGGATAAGTTACGCTCCTATGAAAAAAGTAGGCTCAGGTATTACTTTGCT
GTGGTGGAATGTGATTCAGTTGCAACAGCAGAGCAAATTTACAAGGAGTGTGACGGAGTTGAGTTTGAGAGATCTTCCAATGTTCTTGATTTGAGATTTA
TTCCTGATTCCATGGAATTTAAGCATCCACCTCGAGACATTGCGACTGAGACACCCGGAAGTTATGATGGGATCGACTTCCACACTAAAGCTTTGCAGCA
CAGCAACATACCTATTTCTTGGGATGAAGATGAACCCCAGCGTGTGAAGACCTTGAACAGAAAATTTAATAAGGATCAGTTAGCTGAAACGGAATTCCGG
GAGTATTTAGCCTCTGATGAGGGTGAAAGTGACAGTAGTGAGAATGGCGATGATTCAAAAAAGGCTAAGTACCATGTTCTGATCCAGTCGGCTGATGGTT
CAGACCCTGAAGAGGAGGATGACGAAGCCCAGGAGATGGAGGTTACTTTCAACACAGACTTGGAGAACTTGAGCAAACGTTTACTGGAAAAGAAGGATAA
GAAATCCGAAACTGTTTGGGAAGAGTATCTAAGGAAAAAGAAGGAAAAAAAGGCAGCTCGAAAACAAAAATCCAAGTCCAAGCATTCATCATCAGACGAT
GAAAGTGATTCAGATGTTGATGATAAAGTAGATTTTCAAGATGCAGATGACTTCTTTGTTGAGGACCCACCAGCAGATAAAGGTGGTAAGAAAAAGAAAG
GTGCTCGGGGTAAAGGTGAGAAAGGAAAGTCACAGACTCAAGAAGAGAAGAAACAATCTGAAGCAACGACAGCGGAGCTTGAGTTATTACTTGCTGATGA
TCAACGGGCTGACGATGCCCCCAAAGGATATAACATGAAGCCAAAGAAGGCAAAGGGTAAAAAGGGCAGAGAAGTAGCAGATGAGAGCAAGATACCCACT
GCTGATTACGACGACCCTCGCTTTTCAGCTCTTTTCAATTCGCCTCTCTTCGCATTAGATCCAACGGATCCGCAGTTCAAAAGGAGTGCTGCCTATGCTA
GGCAGACGGCACAAAAACAGCACAAAGGTGATCGGGAGCAATCCCGCAAGCCAAAACACGAAACGGAAGTGCAGACAGAACCTGCTGCTCTGGAGACAAC
TAATGAACAACCACCCATCTCTGGTGATCAACCACGTCAGAATTCGAAGCACGGACTATCTTCTTTGGTCAAGTCCATTAAGATGAAATCGAAACAACTT
CAGCAGCCTTTTGATAGCAAGGCTTCTACGAAAGAACAGAAGAAGAAATCGAAACGTTCAGCTAGAAGTGGGGACCTGGTTGAGTCAGTAAAGAAGAAAG
CCAAAGGTCATTGA
AA sequence
>Lus10041866 pacid=23146995 polypeptide=Lus10041866 locus=Lus10041866.g ID=Lus10041866.BGIv1.0 annot-version=v1.0
MDTAAGKKQNQKKMKGGVRKQRPEGSNSDGIAGIGGSADMVSDPRFASAHTDPRFQKVPKKTTKVIIDSRFSRVFKDKDFVGSSAPLDKRGRRKKQDSSS
ALRHYYQMEEGEGMKSGKAEQKEEDTESEDENVIEQEQLRKKPALAAAESESSSEAESSDSDDENQEEGEDDDTTTDEEDGAGLVFEDDVPEVEVENIPV
VEDGTRRLAAVNMDWRHVRAVDLLVVLRSFLENGGIISSVAVYPTEFGLQRMKEEVNGPVGLFDDEDKDKDEDEDDNNDDELDEDKLRSYEKSRLRYYFA
VVECDSVATAEQIYKECDGVEFERSSNVLDLRFIPDSMEFKHPPRDIATETPGSYDGIDFHTKALQHSNIPISWDEDEPQRVKTLNRKFNKDQLAETEFR
EYLASDEGESDSSENGDDSKKAKYHVLIQSADGSDPEEEDDEAQEMEVTFNTDLENLSKRLLEKKDKKSETVWEEYLRKKKEKKAARKQKSKSKHSSSDD
ESDSDVDDKVDFQDADDFFVEDPPADKGGKKKKGARGKGEKGKSQTQEEKKQSEATTAELELLLADDQRADDAPKGYNMKPKKAKGKKGREVADESKIPT
ADYDDPRFSALFNSPLFALDPTDPQFKRSAAYARQTAQKQHKGDREQSRKPKHETEVQTEPAALETTNEQPPISGDQPRQNSKHGLSSLVKSIKMKSKQL
QQPFDSKASTKEQKKKSKRSARSGDLVESVKKKAKGH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01160 unknown protein Lus10041866
[exp]
0 1
AT1G13160 ARM repeat superfamily protein... Lus10036950
[exp]
2.2 0.8707
AT3G13460 ECT2 evolutionarily conserved C-ter... Lus10020269
[exp]
2.4 0.8425
AT1G50920 Nucleolar GTP-binding protein ... Lus10027370
[exp]
7.2 0.8114
AT5G41190 unknown protein Lus10008488
[exp]
7.7 0.8092
AT4G11630 Ribosomal protein L19 family p... Lus10041948
[exp]
8.5 0.7674
AT3G15970 NUP50 (Nucleoporin 50 kDa) pro... Lus10037931
[exp]
8.5 0.7945
AT1G03110 TRM82, AtTRM82 tRNA modification 82, Transduc... Lus10014680
[exp]
10.1 0.8218
AT4G22350 Ubiquitin C-terminal hydrolase... Lus10010490
[exp]
18.5 0.7962
AT3G16840 P-loop containing nucleoside t... Lus10004404
[exp]
25.5 0.7646
AT2G40700 P-loop containing nucleoside t... Lus10012874
[exp]
27.1 0.7683

Lus10041866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.