Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25580 438 / 4e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 424 / 9e-142 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G29710 341 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34370 332 / 4e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15690 296 / 7e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 280 / 7e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G02750 287 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 279 / 9e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 278 / 2e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 277 / 3e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028413 [exp] 1200 / 0 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014049 [exp] 323 / 5e-102 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019864 [exp] 320 / 9e-101 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032688 [exp] 299 / 8e-94 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 291 / 5e-91 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 286 / 4e-87 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 287 / 3e-86 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031423 [exp] 279 / 2e-84 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028837 [exp] 266 / 3e-82 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G116600 [exp] 593 / 0 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058300 [exp] 341 / 7e-108 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 298 / 9e-90 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 287 / 7e-88 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 283 / 1e-87 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G071800 [exp] 288 / 3e-87 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 288 / 6e-87 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 278 / 7e-87 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 282 / 8e-86 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 281 / 2e-85 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041867 pacid=23146833 polypeptide=Lus10041867 locus=Lus10041867.g ID=Lus10041867.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAGGGAGTTTGCCTTCTTGCTGTCAAGTCACTAAGCACTTCTCCCAAGCTGCGCTTTCCCGGTGAGGCTTCTTGTCCAATCAAACCAACCT TCTTCTCCAGAAACCTAACCACAGCTCAAAGCTTAGAGCTTCAACGCGAAGATTTTAGTGGTTGCCCTCCTGGAGAGAACCAAACCCCTTTAGGTTCATG GAATAACTCAAAGCCTGCAATCGGCTTAAACCCTAATCAAGGTTTTGTGGGCAGCCCTGGAAATCCATGGAGTAATCAGGATAGGCAGAACGGTAACTTA GGTCATATGGAAAACCGTAGCAGTGTCCATCAGAACAGTGCTATTGAGAAAAATGGATACTTTGATGGGAATTCAGGATATAGGAATGATCAGTTTCAGT TTCAACAGAACGTACAAGGCAATGTGCCGAATCGGTGGGATTCGGGAGGTCATTCTCAACAGAACGTGCACGCCAGTAATATGCAGAATTCATGGAGTCC TGGAGGTAATTCGGATGGAGGCTATAGAAGGAATGATAATTTACAAGGTTCTTTACCTTCCCAAGGAGGCTTCGATAATTACTCTTCCCATCATGGTCAG CATATGCAGTATGGGGTGGATGATCGTTATGCTGGTGGTGGTGGATCTCAACAGAAAGTGCACGCCAATATGCAGAATTCATGGGACCAGCATAATCGTA ACGTTGGACAATACCAACAAGGCATTGCCGGGGTACAAAGTGGTGCAGTAGCTTCTCCTCAACAATCAAACAACAATGATGGAGTTGGAGCTGGGGGTTT TGGAGGTACAGTGGATGGAGATCCCATGGAGGAGATGGATAGGTTTTGCAACGAGGGCAAAGCTAAGGAAGCGGTCGAAATGTTGCAGAAGTTGCAAGGA ATGCAGGTAACTGTGGATTTAGATCGTGTTTTGAAGTTAGTTCAAGTTTGTGGAGACTGTATGGCTTTAGCAGAGGCAAAGCTTGTTCATGAACATATTA AGCGTGCAATCCCATCACTTGATATCAACACTTATAACAAAATCCTGGAAATGTACTCAAAATGTGGTGCAATGGAGGTTGCATTTGATGTGTTCAACAA AATGCCGGAGCGCGATTGGATTTCTTTTGATACAATGATCACATGGCTCGCGAAGAATGAACTCGGGGATGATGCAATCGACCTGTTCGCCGAGTTTAAG CAAGCTGGACTTATGATGAATGCTAAGATGTTTATTGGAGTCTTTTCTGCTTGTGCTGCTGCGGGAGATATTGACGAGGGAATGCTGCACTTTGCTTCCA TGACACAGGATTATGGTATCGTTCCGACGATAGAGCATTACATTGGCATTGTGCAAATGTTGGGAAGTGCTGGATATCTTGATGAAGCATTAGAGTTTAT TGACAAAATCCCTCTCGAACCAAGCGTAGATATCTGGGATACCTTAATGGGTCTTTGCAGAGTTCACGGAAACACAGAGCTGGGTGATCGTTGTGCTGAA ATAGTTGAGCAGCTGGACCCCACTCGTCTACATGAACGATCGAAGGCTGGTCTTATACCAGTTAACGCTTCTGACATTGCTAATGAAAAGGAGAAGAAGA AGGCTGCACAAAACCTTCTAGAAATGAGGAGCAGGGTCCACGAATACCGAGCAGGGGATAGATCTCATCCTAATAACGATAAGATATATGCTCTGCTGAG GAACTTGAAGGTTCACATGAAAGAGTGTGGTTATGTTCCCGAGCCGAAATTTGTACTGCATGACATAGACCCAGAAAGCAAGGAGGAAGCCCTTCATGCA CATAGTGAAAGGCTCGCTACTGCCCAAGGCCTTCTCACTAGTCCTCCTCGTACTCCGATTAGAGTAATTAAGAATCTGCGCGTGTGCGGTGATTGTCATA ATGCGTGTAAGATTATATCAAAGATCGTCGGCAGGGAGCTGATAATGAGAGATGCAAAGAGGTTCCATCATTTCAAAGATGGTGTGTGCTCGTGCCGTGA TTATTGGTGA
AA sequence Show only first row Show all	>Lus10041867 pacid=23146833 polypeptide=Lus10041867 locus=Lus10041867.g ID=Lus10041867.BGIv1.0 annot-version=v1.0 MSKKGVCLLAVKSLSTSPKLRFPGEASCPIKPTFFSRNLTTAQSLELQREDFSGCPPGENQTPLGSWNNSKPAIGLNPNQGFVGSPGNPWSNQDRQNGNL GHMENRSSVHQNSAIEKNGYFDGNSGYRNDQFQFQQNVQGNVPNRWDSGGHSQQNVHASNMQNSWSPGGNSDGGYRRNDNLQGSLPSQGGFDNYSSHHGQ HMQYGVDDRYAGGGGSQQKVHANMQNSWDQHNRNVGQYQQGIAGVQSGAVASPQQSNNNDGVGAGGFGGTVDGDPMEEMDRFCNEGKAKEAVEMLQKLQG MQVTVDLDRVLKLVQVCGDCMALAEAKLVHEHIKRAIPSLDINTYNKILEMYSKCGAMEVAFDVFNKMPERDWISFDTMITWLAKNELGDDAIDLFAEFK QAGLMMNAKMFIGVFSACAAAGDIDEGMLHFASMTQDYGIVPTIEHYIGIVQMLGSAGYLDEALEFIDKIPLEPSVDIWDTLMGLCRVHGNTELGDRCAE IVEQLDPTRLHERSKAGLIPVNASDIANEKEKKKAAQNLLEMRSRVHEYRAGDRSHPNNDKIYALLRNLKVHMKECGYVPEPKFVLHDIDPESKEEALHA HSERLATAQGLLTSPPRTPIRVIKNLRVCGDCHNACKIISKIVGRELIMRDAKRFHHFKDGVCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	0	1
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	1.7	0.9116
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	2.4	0.9175
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	4.9	0.9339
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	4.9	0.8996
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	5.7	0.9076
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10014049 [exp]	5.9	0.9038
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	6.0	0.8948
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	7.0	0.9011
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	7.5	0.8736
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	10.8	0.8719

Compare expression of checked genes

Lus10041867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.