Plant FIBer expression Database

Lus10041868 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66090 192 / 7e-62 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028414
[exp]
291 / 5e-101 AT5G66090 226 / 2e-75 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G109100
[exp]
238 / 5e-80 AT5G66090 229 / 2e-76 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00582 Usp Universal stress protein family
Representative CDS sequence
>Lus10041868 pacid=23146723 polypeptide=Lus10041868 locus=Lus10041868.g ID=Lus10041868.BGIv1.0 annot-version=v1.0
ATGGCGTTTGCTCACTATCTGCTCGCTGTTCCCGTCGATACTTGCTCTAATCGAAGCAGAGTTTCACTCTCCAGCTCATCTCCCGCTGCCGAGTCGTCTT
CTTTTCCAGCTCATTTCTCATCTCGCTGCTCCCTAGCGTTTAATCCGCGCAAATCCCCAGTCTTCTCCAGAATCGGACAAAAGGTTAAGGCCAAGGGATC
AGAATCTGAAGTGGATTTGAGTGTAGCGGATGCTTTCACCCGTTTCAAGCACTTACTTCTGCCGATCACCGATACCAACCCTTACCTTTCTGAAGGAACT
AGACAGGCTGCTGCAACTGCTGGTGCATTGGCCAAGAAATATGAAGCGGATATCACAGTCGTTGTGATTGATGAAAGGCAGAAAGAAACTTTTCCAGAAC
ATGAAACCCAAATGTCAAGCATCCGGTGGCACCTCTCTGAAGTTGGGTTCCAGGAGTTTAAGTTGCTGGAGCGATTTGGGGAGGGAAAGAAGCCTACAGC
CATTATTGGCGAGGTTGCTGATGACATGAACTTGGATTTGGTGGTCATAAGCATGGAAGCAATTCACTCCAAGCATGTTGATGCCAACCTGCTGGCAGAG
TTCATCCCCTGCCCTGTTTTGCTCTTGCCCTTGTAA
AA sequence
>Lus10041868 pacid=23146723 polypeptide=Lus10041868 locus=Lus10041868.g ID=Lus10041868.BGIv1.0 annot-version=v1.0
MAFAHYLLAVPVDTCSNRSRVSLSSSSPAAESSSFPAHFSSRCSLAFNPRKSPVFSRIGQKVKAKGSESEVDLSVADAFTRFKHLLLPITDTNPYLSEGT
RQAAATAGALAKKYEADITVVVIDERQKETFPEHETQMSSIRWHLSEVGFQEFKLLERFGEGKKPTAIIGEVADDMNLDLVVISMEAIHSKHVDANLLAE
FIPCPVLLLPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66090 unknown protein Lus10041868
[exp]
0 1
AT5G66090 unknown protein Lus10028414
[exp]
2.4 0.8222
AT1G65295 unknown protein Lus10020197
[exp]
6.0 0.7994
AT4G10000 Thioredoxin family protein (.1... Lus10001283
[exp]
7.7 0.8029
AT3G27160 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribo... Lus10012528
[exp]
13.6 0.8386
AT5G40500 unknown protein Lus10022273
[exp]
18.8 0.7962
AT5G24314 PDE225, PTAC7 PIGMENT DEFECTIVE 225, plastid... Lus10041454
[exp]
24.3 0.8025
AT5G52010 C2H2ZnF C2H2-like zinc finger protein ... Lus10018728
[exp]
26.1 0.7981
AT2G06520 PSBX photosystem II subunit X (.1) Lus10026458
[exp]
28.8 0.8105
AT1G12230 Aldolase superfamily protein (... Lus10032243
[exp]
29.8 0.7279
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Lus10043196
[exp]
31.1 0.7659

Lus10041868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.